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mosaic congih outside planner
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@fitzjalen
fitzjalen committed Mar 13, 2024
1 parent 93a5ad7 commit 0867df8
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286 changes: 286 additions & 0 deletions configs/mosaic_planner.json
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{
"3d_fullres_no_resampling": {
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"resampling_fn_data": "no_resampling_data_or_seg_to_shape",
"resampling_fn_seg": "no_resampling_data_or_seg_to_shape",
"resampling_fn_probabilities": "no_resampling_data_or_seg_to_shape",
"data_identifier": "3d_fullres_no_resampling"
},
"3d_fullres_mosaic_spacing_highres_NoRsmp": {
"inherits_from": "3d_fullres_no_resampling",
"spacing": [1.0, 1.0, 1.0],
"data_identifier": "3d_fullres_mosaic_spacing_highres_NoRsmp"
},
"3d_fullres_mosaic_spacing_stdres_NoRsmp": {
"inherits_from": "3d_fullres_no_resampling",
"spacing": [1.5, 1.5, 1.5],
"data_identifier": "3d_fullres_mosaic_spacing_stdres_NoRsmp"
},
"3d_fullres_mosaic_spacing_lowres_NoRsmp": {
"inherits_from": "3d_fullres_no_resampling",
"spacing": [3.0, 3.0, 3.0],
"data_identifier": "3d_fullres_mosaic_spacing_lowres_NoRsmp"
},
"3d_fullres_mosaic_spacing_highres_ResEnc_NoRsmp": {
"inherits_from": "3d_fullres_mosaic_spacing_highres_NoRsmp",
"UNet_class_name": "ResidualEncoderUNet",
"n_conv_per_stage_encoder": [
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],
"n_conv_per_stage_decoder": [
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1,
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],
"data_identifier": "3d_fullres_mosaic_spacing_highres_ResEnc_NoRsmp"
},
"3d_fullres_mosaic_spacing_stdres_ResEnc_NoRsmp": {
"inherits_from": "3d_fullres_mosaic_spacing_stdres_NoRsmp",
"UNet_class_name": "ResidualEncoderUNet",
"n_conv_per_stage_encoder": [
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],
"n_conv_per_stage_decoder": [
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],
"data_identifier": "3d_fullres_mosaic_spacing_stdres_ResEnc_NoRsmp"
},
"3d_fullres_mosaic_spacing_lowres_ResEnc_NoRsmp": {
"inherits_from": "3d_fullres_mosaic_spacing_lowres_NoRsmp",
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"data_identifier": "3d_fullres_mosaic_spacing_lowres_ResEnc_NoRsmp"
},
"3d_fullres_mosaic_arch2_NoRsmp": {
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"batch_size": 2,
"spacing": [1.0, 1.0, 1.0],
"patch_size": [192, 192, 192],
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"n_conv_per_stage_encoder": [1, 1, 2, 3, 3, 3],
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"pool_op_kernel_sizes": [
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[2, 2, 2],
[2, 2, 2],
[2, 2, 2],
[2, 2, 2]
],
"conv_kernel_sizes": [
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[3, 3, 3],
[3, 3, 3],
[3, 3, 3]
],
"unet_max_num_features": 320,
"normalization_schemes": ["CTNormalization"],
"batch_dice": false,
"data_identifier": "3d_fullres_mosaic_arch2_NoRsmp"
},
"3d_fullres_mosaic_arch2_ResEnc_NoRsmp": {
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],
"data_identifier": "3d_fullres_mosaic_arch2_ResEnc_NoRsmp"
},
"3d_fullres_mosaic_resenc_large_ResEnc_NoRsmp": {
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"spacing": [1.0, 1.0, 1.0],
"batch_size": 2,
"data_identifier": "3d_fullres_mosaic_resenc_large_ResEnc_NoRsmp",
"preprocessor_name": "DefaultPreprocessor",
"patch_size": [
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],
"median_image_size_in_voxels": [
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],
"normalization_schemes": [
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],
"use_mask_for_norm": [
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],
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"n_conv_per_stage_encoder": [
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"num_pool_per_axis": [
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"pool_op_kernel_sizes": [
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],
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],
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3,
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],
"unet_max_num_features": 320,
"resampling_fn_data": "no_resampling_data_or_seg_to_shape",
"resampling_fn_seg": "no_resampling_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
"is_seg": false,
"order": 3,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_seg_kwargs": {
"is_seg": true,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"resampling_fn_probabilities": "no_resampling_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
"is_seg": false,
"order": 1,
"order_z": 0,
"force_separate_z": null
},
"batch_dice": false
}
}
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