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Added functionality to attempt read orientation for single_end_barcodes,... #1987
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…es, to address issue biocore#1980
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Build results will soon be (or already are) available at: http://ci.qiime.org/job/qiime-github-pr/1614/ |
| @@ -81,8 +78,11 @@ def extract_barcodes(fastq1, | |||
| "barcodes_not_oriented.fastq.incomplete"), "w") | |||
| fastq1_out_not_oriented = open(join(output_dir, | |||
| "reads1_not_oriented.fastq.incomplete"), "w") | |||
| fastq2_out_not_oriented = open(join(output_dir, | |||
| "reads2_not_oriented.fastq.incomplete"), "w") | |||
| if input_type in ["barcode_paired_end"]: | |||
There was a problem hiding this comment.
This would be clearer:
if input_type == "barcode_paired_end":
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@gregcaporaso and I decided to not include this feature in the 1.9.1 release since it's a bug fix release. I started reviewing your changes before we made this decision, sorry for the confusion. |
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retest this please |
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Build results will soon be (or already are) available at: http://ci.qiime.org/job/qiime-github-pr/1624/ |
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... to address issue #1980