Fix test

bgruening · Aug 31, 2023 · eff3dfa · eff3dfa
1 parent 2696517
commit eff3dfa
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diff --git a/tools/rna_tools/sortmerna/sortmerna.xml b/tools/rna_tools/sortmerna/sortmerna.xml
@@ -442,7 +442,7 @@ sortmerna --version 2>&1|grep 'SortMeRNA version'
  <output name="aligned_reverse" file="test5_aligned_reverse.fasta" />
  <output name="output_bam" file="test5_bam.bam" compare="sim_size" delta="200" />
  </test>
- <test expect_num_outputs="4">
+ <test expect_num_outputs="5">
  <conditional name="sequencing_type">
  <param name="sequencing_type_selector" value="paired" />
  <param name="forward_reads" value="forward_reads.fasta" />
@@ -483,6 +483,7 @@ sortmerna --version 2>&1|grep 'SortMeRNA version'
  <output name="aligned_reverse" file="test6_aligned_reverse.fasta" />
  <output name="unaligned_forward" file="test6_unaligned_forward.fasta" />
  <output name="unaligned_reverse" file="test6_unaligned_reverse.fasta" />
+ <output name="output_bam" file="test6_bam.bam" compare="sim_size" delta="200" />
  </test>
  <test expect_num_outputs="1">
  <conditional name="sequencing_type">

diff --git a/tools/rna_tools/sortmerna/test-data/test6_bam.bam b/tools/rna_tools/sortmerna/test-data/test6_bam.bam