Simple scripts for embedding of immune repertoires represented as frequency-V-D-J-CDR3 clonotype tables:
- Mapping of repertoires to a database of reference clonotypes
- Prototype-based embedding optimized for repertoires (accounting for V/J, etc) to real space
- 10X/decode data embedding
- Hamming graphs for repertoires, community detection
- Kmer-based representation of repertoires (smart K-mer family clustering)