AGR Curation v0.34.0

What's Changed

• Mergeback release v0.33.0-rc1 to alpha by @mluypaert in #1533
• Initial Code for short circuiting loads once a high error rate is met. SCRUM-3871 by @oblodgett in #1534
• Mergeback release v0.33.0 to alpha by @mluypaert in #1536
• Fixed sorting bug in literature references table by @VarunReddy1111 in #1538
• SCRUM-4057 Fix foreign key errors in gene/allele cleanup by @markquintontulloch in #1539
• Change update message for DTO loads by @markquintontulloch in #1540
• SCRUM-4062 Set obsolete/internal to false for FMS loads by @markquintontulloch in #1541
• Added migration file and created GeneToGeneParalogy class (SCRUM-4063) by @VarunReddy1111 in #1537
• Added paralogy executor, DTO's, service and validator by @VarunReddy1111 in #1542
• SCRUM 4088 - Added Controller and Interface for Paralogy by @VarunReddy1111 in #1543
• Fixed history reporting on all exec's by @oblodgett in #1545
• Added Check Style by @oblodgett in #1546
• Remove old config file by @oblodgett in #1547
• Mergeback release v0.33.1 to alpha by @mluypaert in #1549
• Added debug param for all API calls by @oblodgett in #1551
• Fixed random negative boost error by @oblodgett in #1552
• Removed token operator by @oblodgett in #1553
• Speed up interactions by @oblodgett in #1555
• Added code to speed up loads and fixed alt id search by @oblodgett in #1554
• SCRUM-4114 Handle duplicate interaction refs by @markquintontulloch in #1556
• SCRUM-4062 (update) Avoid duplication caused by condition relations not being submitted in secondary annotations by @markquintontulloch in #1557
• SCRUM-4146 Fix orthology cleanup by @markquintontulloch in #1559
• SCRUM-4159 Fix lookup of human genes by xrefs by @markquintontulloch in #1560
• SCRUM-4062 Handle invalid phenotype terms when searching for primary annotation by @markquintontulloch in #1561
• SCRUM-4160 Handle duplicate xrefs in bulk GenomicEntity loads by @markquintontulloch in #1562
• Remove count query as no pagination is passed in by @oblodgett in #1563
• SCRUM-4107 Turn off auxiliary cleanup for associated annotations by @markquintontulloch in #1564
• SCRUM-4137 include SGD background strain into unique ID generation by @cmpich in #1565
• SCRUM-4018 by @adamgibs in #1567
• SCRUM-4018 fix for migration error by @adamgibs in #1568
• SCRUM-4089 Implement Paralogy Validator and test cases by @VarunReddy1111 in #1566
• SCRUM-3708 fixes by @markquintontulloch in #1569
• SCRUM-3951 Fix reference synchronisation by @markquintontulloch in #1571
• SCRUM-4137 add SGD background String info to uniqueID from DieseaseAn… by @cmpich in #1570
• SCRUM-4090 Paralogy Load clean up by @VarunReddy1111 in #1572
• Added rule to disallow trailing whitespace by @oblodgett in #1573
• Add prettier by @adamgibs in #1574
• SCRUM-4162 change to have multiple error messages in download file by @VarunReddy1111 in #1575
• More checkstyle checks by @oblodgett in #1576
• SCRUM-4186 Migration for OMIM to MIM switch by @markquintontulloch in #1578
• SCRUM-3708: add initial load of gene expressions by @abecerra in #1558
• SCRUM-4113 remove name, curie, and modInternalId from DA subject filter by @adamgibs in #1577
• SCRUM-3708: bump migration prefix by @abecerra in #1579
• SCRUM-4137 Fix cleanup error by @markquintontulloch in #1580
• SCRUM-4148 added OR token operator back to multiselect filter by @adamgibs in #1581
• SCRUM-4191 Turn off failure limit for paralogy and interaction loads by @markquintontulloch in #1582
• SCRUM-3708: replace modId per AGRId in in GeneExpression uniqueId by @abecerra in #1583
• SCRUM-4183 by @adamgibs in #1584
• SCRUM-3708: fix validation for evidence by @abecerra in #1585
• SCRUM-3951 (update) Fix NPE by @markquintontulloch in #1586
• SCRUM-4204 Sort file history by date load started by @markquintontulloch in #1587
• SCRUM-4209 Report loads as 'FAILED' when stopped due to exceeding failure rate cutoff by @markquintontulloch in #1588
• SCRUM-4210 Reset error message on file reload by @markquintontulloch in #1589
• Added migration to add all the category tags into vocabulary by @VarunReddy1111 in #1590
• SCRUM-4228 Remove error rate column from data loads page by @markquintontulloch in #1592
• SCRUM-4227 Fix null error on file history dropdown for files with no history by @markquintontulloch in #1593
• Release/v0.34.0 rc1 by @markquintontulloch in #1600
• Release v0.34.0 by @markquintontulloch in #1613

Full Changelog: v0.33.1...v0.34.0