DESCRIPTION

Package: scater
Type: Package
Authors@R: c(
        person("Davis", "McCarthy", role=c("aut"), email="davis@ebi.ac.uk"),
        person("Kieran", "Campbell", role=c("aut"), email="kieran.campbell@sjc.ox.ac.uk"),
        person("Aaron", "Lun", role = c("aut", "ctb"), email="infinite.monkeys.with.keyboards@gmail.com"),
        person("Quin", "Wills", role=c("aut"), email="qilin@quinwills.net"),
        person("Vladimir", "Kiselev", role=c("ctb"), email="vk6@sanger.ac.uk"),
        person("Felix G.M.", "Ernst", role=c("ctb"), email="felix.gm.ernst@outlook.com"),
        person("Alan", "O'Callaghan", role=c("ctb", "cre"), email="alan.ocallaghan@outlook.com"),
        person("Yun", "Peng", role=c("ctb"), email="yunyunp96@gmail.com"),
        person("Leo", "Lahti", role=c("ctb"), email="leo.lahti@utu.fi", comment = c(ORCID = "0000-0001-5537-637X")),
        person("Tuomas", "Borman", role = c("ctb"), comment = c(ORCID = "0000-0002-8563-8884"))
    )
Version: 1.33.4
Date: 2024-07-18
License: GPL-3
Title: Single-Cell Analysis Toolkit for Gene Expression Data in R
Description: A collection of tools for doing various analyses of
        single-cell RNA-seq gene expression data, with a focus on
        quality control and visualization.
Depends: 
    SingleCellExperiment,
    scuttle,
    ggplot2
Imports: 
    stats,
    utils,
    methods,
    Matrix,
    BiocGenerics,
    S4Vectors,
    SummarizedExperiment,
    MatrixGenerics,
    SparseArray,
    DelayedArray,
    beachmat,
    BiocNeighbors,
    BiocSingular,
    BiocParallel,
    rlang,
    ggbeeswarm,
    viridis,
    Rtsne,
    RColorBrewer,
    RcppML,
    uwot,
    pheatmap,
    ggrepel,
    ggrastr
Suggests: 
    BiocStyle,
    DelayedMatrixStats,
    snifter,
    densvis,
    cowplot,
    biomaRt,
    knitr,
    scRNAseq,
    robustbase,
    rmarkdown,
    testthat,
    Biobase,
    scattermore
VignetteBuilder: knitr
biocViews: ImmunoOncology, SingleCell, RNASeq, QualityControl, Preprocessing, Normalization,
        Visualization, DimensionReduction, Transcriptomics,
        GeneExpression, Sequencing, Software, DataImport,
        DataRepresentation, Infrastructure, Coverage
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: http://bioconductor.org/packages/scater/
BugReports: https://support.bioconductor.org/