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46 followers · 38 following

Achievements

Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

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alanocallaghan/README.md

I work on statistics and machine learning in biomedical data. At the moment I am working on the QuPath project, helping to improve and expand QuPath's ability to perform image analysis workflows in a variety of data types. Previously I worked on modelling of eQTLs using allele specific expression in celltype-specific studies of immune-mediated diseases, and before that on quantifying expression heterogeneity in single cell RNAseq data using a Bayesian approach.

I maintain some R packages:

I currently maintain two parts of the Bioconductor book ecosystem:

Book/Chapter Devel Release Issues Pull requests
OSCA devel release GitHub issues GitHub pulls
OSCA.multisample devel release GitHub issues GitHub pulls

I also contribute to:

  • CRAN packages:
  • Bioc:
    Package Devel Release Issues Pull requests
    BASiCS GitHub issues GitHub pulls

Some other stuff:

Pinned Loading

  1. scater scater Public

    Clone of the Bioconductor repository for the scater package.

    R 95 40

  2. bayefdr bayefdr Public

    Forked from VallejosGroup/bayefdr

    Bayesian estimation and optimisation of expected FDR and expected FNR

    R

  3. densvis densvis Public

    Forked from hhcho/densvis

    R package implementing the density-preserving data visualization tools den-SNE and densMAP

    C++ 2 2

  4. snifter snifter Public

    R wrapper for the python openTSNE library

    R 3 2

  5. contrast contrast Public

    R contrast package

    R 2 1

  6. talgalili/heatmaply talgalili/heatmaply Public

    Interactive Heat Maps for R Using plotly

    R 378 73