usage: createProjectDirectories.py [-h] -p PROJECT -vc VERSIONCONTROL [-r REPOSITORY]

Creates a directory and subdirectories for a version controlled project. Starts either a mercurial (hg) or a git repo. Project structure roughly follows the suggestions from: A Quick Guide to Organizing Computational Biology Projects

Directory structure: Project/

• .git/
• data/
• doc/
• scripts/
• results/

Notes: By default it assumes that the repo will live online in bitbucket, and the user name is also set to "adomingues". Use options -r and -u to change this.

optional arguments:

-h, --help
show this help message and exit

-p PROJECT, --project PROJECT Project name. The root of the directory structure

-vc VERSIONCONTROL, --versionControl VERSIONCONTROL Options: hg or git. Starts version control with list of ignored files included.

-r REPOSITORY, --repository REPOSITORY Options: github or bitbucket. Adds an online repo to the VCS definitions.