TCGA data Pre-processing for differential analysis
TCGA Differential analysis
COX regression analysis
ESTIMATE immune score
ROC curve drawing
Time-dependent ROC
TCGA differential analysis heat map
TCGA differential analysis volcano map
CIBERSORT immune cell ratio
Correlation heat map
Survival analysis
Gene high and low group differential analysis (preliminary preparation for enrichment analysis)
Unsupervised clustering
Grouping cibersort
ssGSEA
KEGG
GSEA
LASSO
TMB tumor mutation burden
LASSO dot plot display
Nomogram
Download and organize GEO database data
GEO differential analysis and heat map display
GEO three major enrichment analysis
GEO data set merging
Immune checkpoint expression differences Genecards usage
Manual annotation of GEO gene names
GEPIA database-01 co-expressed genes
GEPIA database-02 survival analysis
GEPIA database-03 differential analysis
fpkm to tpm
STRING to build molecular network
Cytoscape to build molecular network
Xcell WGCNA