Peskas Zanzibar Data Pipeline #81
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| name: Peskas Zanzibar Data Pipeline | |
| on: | |
| push: | |
| schedule: | |
| - cron: '0 0 */4 * *' | |
| env: | |
| WCS_SURVEYS_ID: ${{ secrets.WCS_SURVEYS_ID }} | |
| WCS_SURVEYS_UNAME: ${{ secrets.WCS_SURVEYS_UNAME }} | |
| WCS_SURVEYS_PSSW: ${{ secrets.WCS_SURVEYS_PSSW }} | |
| GCP_SA_KEY: ${{ secrets.PESKAS_DATAINGESTION_GCS_KEY }} | |
| jobs: | |
| build-container: | |
| name: Build R container | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Build image with cache | |
| id: build-docker | |
| uses: whoan/docker-build-with-cache-action@v5 | |
| with: | |
| username: $GITHUB_ACTOR | |
| password: "${{ secrets.GITHUB_TOKEN }}" | |
| registry: docker.pkg.github.com | |
| image_name: r-runner-peskas-zanzibar | |
| dockerfile: Dockerfile.prod | |
| ingest-wcs-surveys: | |
| name: Ingest WCS kobo surveys | |
| needs: build-container | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: docker.pkg.github.com/worldfishcenter/peskas.zanzibar.data.pipeline/r-runner-peskas-zanzibar | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Set env to production | |
| if: endsWith(github.ref, '/main') | |
| run: echo "R_CONFIG_ACTIVE=production" >> $GITHUB_ENV | |
| - name: Call ingest_wcs_surveys() | |
| run: Rscript -e 'peskas.zanzibar.data.pipeline::ingest_wcs_surveys()' | |
| preprocess-wcs-surveys: | |
| name: Preprocess WCS kobo surveys | |
| needs: ingest-wcs-surveys | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: docker.pkg.github.com/worldfishcenter/peskas.zanzibar.data.pipeline/r-runner-peskas-zanzibar | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Set env to production | |
| if: endsWith(github.ref, '/main') | |
| run: echo "R_CONFIG_ACTIVE=production" >> $GITHUB_ENV | |
| - name: Call preprocess_wcs_surveys() | |
| run: Rscript -e 'peskas.zanzibar.data.pipeline::preprocess_wcs_surveys()' | |
| validate-wcs-surveys: | |
| name: Validate WCS kobo surveys | |
| needs: preprocess-wcs-surveys | |
| runs-on: ubuntu-20.04 | |
| container: | |
| image: docker.pkg.github.com/worldfishcenter/peskas.zanzibar.data.pipeline/r-runner-peskas-zanzibar | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Set env to production | |
| if: endsWith(github.ref, '/main') | |
| run: echo "R_CONFIG_ACTIVE=production" >> $GITHUB_ENV | |
| - name: Call validate_wcs_surveys() | |
| run: Rscript -e 'peskas.zanzibar.data.pipeline::validate_wcs_surveys()' |