CellProfiler Demonstrations

Demonstrating various CellProfiler development or implementations.

Development

Perform the following steps to setup a Python development environment.

1. Install Python (we recommend using pyenv or similar)
2. Install Poetry
3. Install Poetry Environment: poetry install

Running Tasks

We use Poe the Poet for processing various tasks within this repo. Poe the Poet is included as an environment dependency and may be used as follows:

# show existing tasks
poetry run poe

# run a specific task
poetry run poe <task name>