ufish-web

The web interface for the U-FISH project.

Online instance: ufish-web

ImJoy API

Usage example:

ufish = await api.createWindow("https://ufish-team.github.io/")
img = await ufish.fetchImage("https://huggingface.co/datasets/NaNg/TestData/resolve/main/FISH_spots/MERFISH_1.tif")
out = await ufish.predict(img)  # predict the spots
print(out.enhanced.shape)
print(out.spots.shape)

CLick to run it using: web-python-console

Full API List

Method	Parameters	Description
predict	img: np.ndarray	Predict the spots in the input image. The input should be 2d image(x, y) or RGB image(x, y, 3)
waitReady		Wait until the model is ready.
setInputImage	img: np.ndarray; name: string	Set the input image.
getOutput		Get the output of the model. It's an object contain enhanced: np.ndarray and spots: np.ndarray fields
runPredict		Run the prediction.
fetchImage	url: string	Fetch an image from the given url, return a numpy array
setOnnxModelUrl	url: string	Set the ONNX model url.
getInputImage		Get the input image.

Development

npm install

Compile and Hot-Reload for Development

npm run dev

Type-Check, Compile and Minify for Production

npm run build

Lint with ESLint

npm run lint