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First pass at modular DataPipeline #1
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Commits on Aug 2, 2021
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PiperOrigin-RevId: 388172326 Change-Id: I11d9e498c226cd752947feb51b7d1eb343b4d7ab
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Add a direct link to PDB70 2020-05-13.
PiperOrigin-RevId: 388195957 Change-Id: Id22b96c964a82e3450a5f457d8facd1e85b1e86a
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Commits on Aug 12, 2021
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PiperOrigin-RevId: 390355132 Change-Id: I920a80db674541af41ee83ef3d5bd5255c782ee9
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Commits on Aug 13, 2021
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Set versions of libraries AlphaFold Colab notebook depends on.
PiperOrigin-RevId: 390553964 Change-Id: Ia5bc6e12ab3f1a7827b7d914c93f6990a1139780
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Use pLDDT in the B-factor column of the output PDBs.
PiperOrigin-RevId: 390566020 Change-Id: I3fafbe8246d0a5ad018f0398b39bf7dacee00468
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Commits on Aug 18, 2021
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Ethan Ho committed
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Ethan Ho committed
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Halfway through refactor as a dataclass
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Ethan Ho committed
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Entrypoint script uses ModularDataPipeline
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Ethan Ho committed
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Move cli interface to dedicated submodule
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Add afpipeline as console_script
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Click command for jackhmmer_mgnify
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Commits on Aug 19, 2021
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Ethan Ho committed
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Commits on Aug 20, 2021
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Ethan Ho committed
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Expose cache directory as env var
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cache_to_pckl in its own module
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Commits on Aug 23, 2021
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Ethan Ho committed
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Logging for click CLI commands
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