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Large project files code refactor (DO NOT MERGE) #2

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@cx1111 cx1111 commented Jul 13, 2021

Here's the large PR for cleaning up a lot of the project code and fixing some small bugs. Especially separating out functionality for dealing project files to its own new module modelfiles.py.

I'll be making smaller PRs to merge directly into MIT-LCP/physionet-build directly. This PR is open for reference.

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