Merge pull request #2 from almahmoud/patch-4

Fixed EBI image issue on 3.20
SydneyBioX · Nov 7, 2024 · 774905a · 774905a
2 parents b8108b2 + a9a1898
commit 774905a
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -1,9 +1,9 @@
-FROM bioconductor/bioconductor_docker:devel
+FROM bioconductor/bioconductor_docker:3.20
 
 WORKDIR /home/rstudio
 
 COPY --chown=rstudio:rstudio . /home/rstudio/
 
-RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)"
-
-RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"
+RUN ln -s /usr/lib/x86_64-linux-gnu/libtiff.so.6 /usr/lib/x86_64-linux-gnu/libtiff.so.5 && \
+    Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask=FALSE)" && \
+    Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())"