Add system call to install

Sage-Bionetworks · Nov 1, 2023 · ab5d3c8 · ab5d3c8
1 parent d0d32ac
commit ab5d3c8
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diff --git a/R/zzz.R b/R/zzz.R
@@ -17,6 +17,7 @@
  reticulate::use_virtualenv('r-reticulate')
  reticulate::py_install(c("requests<3", "pandas~=2.0.0", "pysftp", "jinja2", "markupsafe"))
  # reticulate::py_install(c(paste("synapseclient==", PYTHON_CLIENT_VERSION, sep="")), pip=T)
+ system('virtualenv r-reticulate')
  system('pip3 install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple "synapseclient[pandas]"')
  }
  )

diff --git a/tools/installPythonClient.R b/tools/installPythonClient.R
@@ -20,4 +20,5 @@ reticulate::use_virtualenv('r-reticulate')
 # reticulate::py_run_string(sprintf("sys.path.append(\"%s\")", file.path(baseDir, "inst", "python")))
 reticulate::py_install(c("requests<3", "pandas~=2.0.0", "pysftp", "jinja2", "markupsafe"))
 #reticulate::py_install(c(paste("synapseclient==", PYTHON_CLIENT_VERSION, sep="")), pip=T)
+system('virtualenv r-reticulate')
 system('pip3 install --index-url https://test.pypi.org/simple/ --extra-index-url https://pypi.org/simple "synapseclient[pandas]"')