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README.html

@@ -403,7 +403,7 @@ <h2> Contents </h2>
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-  <p>For a detailed description of the project, take a look at <span class="xref myst">publication at JGR: Solid Earth</span>.
+  <p>For a detailed description of the project, take a look at <a class="reference external" href="https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2023JB027211">publication at JGR: Solid Earth</a>.
 This publication was also highlighted in Eos. Take a look to the article <a class="reference external" href="https://eos.org/editor-highlights/should-i-stay-or-should-i-goto-another-paleomagnetic-site">Should I Stay or Should I Go…To Another Paleomagnetic Site?</a> by Daniel Pastor-Galán.</p>
 <p><a class="reference external" href="https://mybinder.org/v2/gh/PolarWandering/PaleoSampling/HEAD"><img alt="Binder" src="https://mybinder.org/badge_logo.svg" /></a>
 <a class="reference external" href="https://polarwandering.github.io/PaleoSampling/"><img alt="Jupyter Book Badge" src="https://jupyterbook.org/badge.svg" /></a>

_sources/README.md

@@ -1,4 +1,4 @@
-For a detailed description of the project, take a look at [publication at JGR: Solid Earth]([https://www.authorea.com/doi/full/10.22541/essoar.168881772.25833701](https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2023JB027211)).
+For a detailed description of the project, take a look at [publication at JGR: Solid Earth](https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2023JB027211).
 This publication was also highlighted in Eos. Take a look to the article [Should I Stay or Should I Go…To Another Paleomagnetic Site?](https://eos.org/editor-highlights/should-i-stay-or-should-i-goto-another-paleomagnetic-site) by Daniel Pastor-Galán.
 
 [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/PolarWandering/PaleoSampling/HEAD) 

book/Main.html

@@ -429,7 +429,7 @@ <h1>Quantitative Analysis of Paleomagnetic Sampling Strategies<a class="headerli
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-<p>For a detailed description of the project, take a look at <a class="reference external" href="%5Bhttps://www.authorea.com/doi/full/10.22541/essoar.168881772.25833701%5D(https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2023JB027211)">publication at JGR: Solid Earth</a>.
+<p>For a detailed description of the project, take a look at <a class="reference external" href="https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2023JB027211">publication at JGR: Solid Earth</a>.
 This publication was also highlighted in Eos. Take a look to the article <a class="reference external" href="https://eos.org/editor-highlights/should-i-stay-or-should-i-goto-another-paleomagnetic-site">Should I Stay or Should I Go…To Another Paleomagnetic Site?</a> by Daniel Pastor-Galán.</p>
 <p><a class="reference external" href="https://mybinder.org/v2/gh/PolarWandering/PaleoSampling/HEAD"><img alt="Binder" src="https://mybinder.org/badge_logo.svg" /></a>
 <a class="reference external" href="https://polarwandering.github.io/PaleoSampling/"><img alt="Jupyter Book Badge" src="https://jupyterbook.org/badge.svg" /></a>

figures/figure1/Figure1.html

@@ -446,7 +446,7 @@ <h1>Figure 1: Mean Squared Error as a function of the samples per site and sites
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-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2335/2142690695.py:4: DeprecationWarning: Please use `gaussian_filter` from the `scipy.ndimage` namespace, the `scipy.ndimage.filters` namespace is deprecated.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2227/2142690695.py:4: DeprecationWarning: Please use `gaussian_filter` from the `scipy.ndimage` namespace, the `scipy.ndimage.filters` namespace is deprecated.
   from scipy.ndimage.filters import gaussian_filter
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figures/figure2/Figure2.html

@@ -824,7 +824,7 @@ <h2>1. Figures a &amp; b: Decay as a function of the number of total samples <sp
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-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2366/1007751571.py:6: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2258/1007751571.py:6: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
   palette = {x : matplotlib.cm.get_cmap(&#39;viridis&#39;)((x-1)/7) for x in np.arange(1,8)}
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-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2366/3024017231.py:7: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2258/3024017231.py:7: MatplotlibDeprecationWarning: The get_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps[name]`` or ``matplotlib.colormaps.get_cmap(obj)`` instead.
   palette = {x : matplotlib.cm.get_cmap(&#39;viridis&#39;)((x-1)/7) for x in np.arange(1,8)}
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