Re-merging changes of #49 into main #28

	name: run-tests

	on:
	pull_request:
	branches:
	- main
	push:
	branches:
	- main

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.9"]

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies manually
	run: \|
	pip install future matplotlib cartopy pandas requests seaborn jupyter-book scikit-learn ipywidgets
	pip install pmagpy==4.2.106
	pip install -e ./smpsite
	pip install flake8 pytest pytest-cov
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	pytest smpsite --cov --cov-report=html:coverage_re
	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v3
	# with:
	# directory: ./smpsite
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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