Compatibility with TaxHubV2 #768
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| name: pytest | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - hotfixes | |
| - develop | |
| - refactor | |
| pull_request: | |
| branches: | |
| - master | |
| - hotfixes | |
| - develop | |
| - refactor | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| debian-version: [ '11', '12' ] | |
| include: | |
| - debian-version: '11' | |
| python-version: '3.9' | |
| postgres-version: '13' | |
| postgis-version: '3.2' | |
| - debian-version: '12' | |
| python-version: '3.11' | |
| postgres-version: '15' | |
| postgis-version: '3.3' | |
| name: Debian ${{ matrix.debian-version }} | |
| services: | |
| postgres: | |
| image: postgis/postgis:${{ matrix.postgres-version }}-${{ matrix.postgis-version }} | |
| env: | |
| POSTGRES_DB: geonature2db | |
| POSTGRES_PASSWORD: geonatpasswd | |
| POSTGRES_USER: geonatadmin | |
| ports: | |
| - 5432:5432 | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| redis: | |
| image: redis | |
| ports: | |
| - 6379:6379 | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| steps: | |
| - name: Add postgis_raster database extension | |
| if: ${{ matrix.postgis-version >= 3 }} | |
| run: | | |
| psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "postgis_raster";' | |
| env: | |
| PGPASSWORD: geonatpasswd | |
| - name: Add database extensions | |
| run: | | |
| psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "hstore";' | |
| psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "uuid-ossp";' | |
| psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "pg_trgm";' | |
| psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "unaccent";' | |
| env: | |
| PGPASSWORD: geonatpasswd | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install GDAL | |
| run: | | |
| sudo apt update | |
| sudo apt install -y libgdal-dev | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install \ | |
| -e ..[tests] \ | |
| -r requirements-dev.txt \ | |
| working-directory: ./dependencies/GeoNature/backend | |
| - name: Install database | |
| run: | | |
| geonature db upgrade geonature@head -x local-srid=2154 | |
| geonature db autoupgrade -x local-srid=2154 | |
| geonature taxref import-v15 --skip-bdc-statuts | |
| geonature db upgrade geonature-samples@head | |
| geonature db upgrade nomenclatures_taxonomie_data@head | |
| geonature db upgrade ref_geo_fr_departments@head | |
| geonature db upgrade ref_geo_fr_municipalities@head | |
| geonature db upgrade ref_geo_inpn_grids_10@head | |
| env: | |
| GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml | |
| - name: Install import module backend | |
| run: | | |
| pip install -r requirements-dev.in | |
| pip install . | |
| - name: Install import module database | |
| run: | | |
| geonature upgrade-modules-db IMPORT | |
| env: | |
| GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml | |
| - name: Test with pytest | |
| run: | | |
| pytest -v --cov --cov-report xml | |
| env: | |
| GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml | |
| GEONATURE_SETTINGS: gn_module_import.test_config | |
| - name: Upload coverage to Codecov | |
| if: ${{ matrix.debian-version == '12' }} | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| flags: pytest |