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@@ -23,63 +23,70 @@ jobs: | |
matrix: | ||
version: | ||
- '1.10' | ||
python: [3.9] | ||
os: | ||
- ubuntu-latest | ||
python: | ||
- '3.10' | ||
os: [ubuntu-latest, macos-latest] | ||
arch: | ||
- x64 | ||
steps: | ||
- uses: actions/checkout@v2 | ||
# Cancel ongoing CI test runs if pushing to branch again before the previous tests | ||
# have finished | ||
- name: Cancel ongoing test runs for previous commits | ||
uses: styfle/[email protected] | ||
with: | ||
access_token: ${{ github.token }} | ||
# Do tests | ||
- uses: actions/checkout@v4 | ||
- name: Set up Python 🐍 ${{ matrix.python }} | ||
uses: actions/setup-python@v2 | ||
with: | ||
python-version: ${{ matrix.python }} | ||
- name: Create environment with micromamba 🐍🖤 | ||
uses: mamba-org/setup-micromamba@v1 | ||
with: | ||
micromamba-version: '1.5.6-0' | ||
environment-file: ./environment.yml | ||
environment-name: oggm_env # it is recommendable to add both name and yml file. | ||
init-shell: bash | ||
cache-environment: true | ||
# condarc-file: ./condarc.yml # If necessary, we can include .condarc to configure environment | ||
- name: Test creation of environment with micromamba 🔧🐍🖤 | ||
run: | | ||
which python | ||
conda env export | ||
shell: bash -el {0} | ||
- name: Update certifi | ||
run: | | ||
pip install --upgrade certifi | ||
python-version: ${{ matrix.python }} | ||
- name: Install certifi and set SSL_CERT_FILE | ||
run: | | ||
pip install --upgrade certifi | ||
echo "SSL_CERT_FILE=$(python -c 'import certifi; print(certifi.where())')" >> $GITHUB_ENV | ||
shell: bash -el {0} | ||
# - name: Test OGGM installation 🔧🌎 | ||
# run: pytest.oggm | ||
# shell: bash -el {0} | ||
- name: Set ENV Variables for PyCall.jl 🐍 📞 | ||
run: export PYTHON=/home/runner/micromamba/envs/oggm_env/bin/python | ||
shell: bash -el {0} | ||
- uses: julia-actions/setup-julia@v1 | ||
- uses: julia-actions/setup-julia@latest | ||
with: | ||
version: ${{ matrix.version }} | ||
arch: ${{ matrix.arch }} | ||
- name: Check Julia SSL certifications 🔎🔐 | ||
run: julia -e 'using NetworkOptions; println(NetworkOptions.bundled_ca_roots()); println(NetworkOptions.ca_roots())' | ||
shell: bash -el {0} | ||
- uses: julia-actions/cache@v1 | ||
- uses: julia-actions/cache@v2 | ||
with: | ||
cache-registries: "true" | ||
cache-compiled: "true" | ||
- uses: actions/cache@v4 | ||
env: | ||
cache-name: cache-artifacts | ||
with: | ||
path: ~/.julia/artifacts | ||
key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }} | ||
restore-keys: | | ||
${{ runner.os }}-test-${{ env.cache-name }}- | ||
${{ runner.os }}-test- | ||
${{ runner.os }}- | ||
- name: Install dependencies on Ubuntu | ||
if: matrix.os == 'ubuntu-latest' | ||
run: | | ||
sudo apt-get update | ||
sudo apt-get install -y libxml2 | ||
shell: bash -el {0} | ||
- name: Install dependencies on macOS | ||
if: matrix.os == 'macos-latest' | ||
run: | | ||
brew install libxml2 | ||
export PKG_CONFIG_PATH="/usr/local/opt/libxml2/lib/pkgconfig" | ||
shell: bash -el {0} | ||
- uses: julia-actions/julia-buildpkg@v1 | ||
env: | ||
PYTHON : /home/runner/micromamba/envs/oggm_env/bin/python | ||
# The SSL certificate path can be readed from the action "Check Julia SSL certifications" | ||
SSL_CERT_FILE: /etc/ssl/certs/ca-certificates.crt | ||
- uses: julia-actions/julia-runtest@v1 | ||
JULIA_SSL_CA_ROOTS_PATH: "" | ||
- uses: julia-actions/julia-runtest@latest | ||
env: | ||
PYTHON : /home/runner/micromamba/envs/oggm_env/bin/python | ||
SSL_CERT_FILE: /etc/ssl/certs/ca-certificates.crt | ||
JULIA_SSL_CA_ROOTS_PATH: "" | ||
- uses: julia-actions/julia-processcoverage@v1 | ||
- uses: codecov/codecov-action@v3 | ||
- uses: codecov/codecov-action@v4 | ||
with: | ||
token: ${{secrets.CODECOV_TOKEN}} | ||
files: lcov.info |