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Add test data #1

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MalinAhlberg opened this issue Mar 20, 2024 · 2 comments
Open

Add test data #1

MalinAhlberg opened this issue Mar 20, 2024 · 2 comments
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@MalinAhlberg
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Test data created by the EJP-RD NBIS team should be added to the data folder

@wna-se wna-se self-assigned this Mar 25, 2024
@wna-se
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wna-se commented Mar 25, 2024

I will add test data inspired by the B1MG demonstrator (D4.2, YouTube)

Likely work:

  • README.md and/or a script/manifest that can be used to extract/download a subset of the files and metadata from the Rare Disease Synthetic Dataset (EGAD00001008392)
  • Test data for the FAIR-in-a-Box instance including a minimal resource described according to the EJP-RD Metadata model with a Dataset, Data Distribution and Data service.
  • Test data for the CARE-SM Beacon endpoint.

Will be working in feat/add_test_data_b1mg_demonstrator

@wna-se
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wna-se commented Mar 25, 2024

I will add test data based on the scenario discussed with the clinical genomics lab at Lumc

  • Test data for the FAIR-in-a-Box instance including a minimal resource described according to the EJP-RD Metadata model with a Dataset, Data Distribution and Data service to identify resources that have the relevant imaging and patient data and that supports data provisioning through SPARQL and CARE-SM and Vantage6 / containerised compute.
  • Test data for running SPARQL queries using CARE-SM to select imaging outputs associated with a patient age, and return the patient age and corresponding IRI:s to images.

Will be working in feat/add_test_data_lumc_imaging_demonstrator

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