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Merge pull request #13 from MurrellGroup/addproperty #36

Merge pull request #13 from MurrellGroup/addproperty

Merge pull request #13 from MurrellGroup/addproperty #36

Triggered via push October 10, 2024 17:15
Status Failure
Total duration 1m 47s
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CI.yml

on: push
Matrix: test
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3 errors and 3 warnings
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/deploydocs.jl#L380
Git failed to fetch [email protected]:MurrellGroup/ProteinChains.jl This can be caused by a DOCUMENTER_KEY variable that is not correctly set up. Make sure that the environment variable is properly set up as a Base64-encoded string of the SSH private key. You may need to re-generate the keys with DocumenterTools.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/deploydocs.jl#L510
Failed to push: exception = failed process: Process(setenv(`/home/runner/.julia/artifacts/0abefbe87d3e3a7286442098fb54c2ed70b0486c/bin/git fetch upstream`,["PATH=/home/runner/.julia/artifacts/1308e48c3f4f2fd9adaa56b9bd4a86a995d50abd/bin:/home/runner/.julia/artifacts/c951fb23b5652def1dea483af7095a38f3b3cefd/bin:/home/runner/.julia/artifacts/0abefbe87d3e3a7286442098fb54c2ed70b0486c/bin:/opt/hostedtoolcache/julia/1.11.0/x64/bin:/snap/bin:/home/runner/.local/bin:/opt/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendor/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin", "DOTNET_SKIP_FIRST_TIME_EXPERIENCE=1", "GITHUB_RUN_NUMBER=36", "GITHUB_REF_NAME=main", "RUNNER_ARCH=X64", "PERFLOG_LOCATION_SETTING=RUNNER_PERFLOG", "LD_LIBRARY_PATH=/opt/hostedtoolcache/julia/1.11.0/x64/bin/../lib/julia:/home/runner/.julia/artifacts/1308e48c3f4f2fd9adaa56b9bd4a86a995d50abd/lib:/home/runner/.julia/artifacts/c951fb23b5652def1dea483af7095a38f3b3cefd/lib:/home/runner/.julia/artifacts/e4e0c1bb8f52a7a9d586af15bc1713e83c1f42af/lib:/opt/hostedtoolcache/julia/1.11.0/x64/bin/../lib/julia:/opt/hostedtoolcache/julia/1.11.0/x64/bin/../lib", "GOROOT_1_20_X64=/opt/hostedtoolcache/go/1.20.14/x64", "ACCEPT_EULA=Y", "GOROOT_1_21_X64=/opt/hostedtoolcache/go/1.21.13/x64", "ANT_HOME=/usr/share/ant", "RUNNER_USER=runner", "LEIN_HOME=/usr/local/lib/lein", "GITHUB_REPOSITORY_ID=843357386", "GITHUB_ACTOR=AntonOresten", "GITHUB_WORKFLOW_REF=MurrellGroup/ProteinChains.jl/.github/workflows/CI.yml@refs/heads/main", "ANDROID_NDK_LATEST_HOME=/usr/local/lib/android/sdk/ndk/27.1.12297006", "SYSTEMD_EXEC_PID=602", "RUNNER_ENVIRONMENT=github-hosted", "OPENBLAS_DEFAULT_NUM_THREADS=1", "GIT_TEMPLATE_DIR=/home/runner/.julia/artifacts/0abefbe87d3e3a7286442098fb54c2ed70b0486c/share/git-core/templates", "STATS_D_D=true", "USER=runner", "CONDA=/usr/share/miniconda", "JULIA_PKG_SERVER_REGISTRY_PREFERENCE=eager", "VCPKG_INSTALLATION_ROOT=/usr/local/share/vcpkg", "STATS_VMFE=true", "GITHUB_REF_PROTECTED=false", "GITHUB_API_URL=https://api.github.com", "GITHUB_RUN_ATTEMPT=1", "GITHUB_ACTIONS=true", "STATS_V3PS=true", "GITHUB_SHA=f100085416bc57d81690a1b68c5048e5e8a6a480", "JAVA_HOME=/usr/lib/jvm/temurin-11-jdk-amd64", "STATS_EXT=true", "ANDROID_SDK_ROOT=/usr/local/lib/android/sdk", "SWIFT_PATH=/usr/share/swift/usr/bin", "GITHUB_ENV=/home/runner/work/_temp/_runner_file_commands/set_env_12897091-ffbe-43ed-82da-a82804aa45e8", "JAVA_HOME_17_X64=/usr/lib/jvm/temurin-17-jdk-amd64", "GITHUB_ACTION_PATH=/home/runner/work/_actions/julia-actions/julia-docdeploy/v1", "RUNNER_PERFLOG=/home/runner/perflog", "RUNNER_NAME=GitHub Actions 15", "EDGEWEBDRIVER=/usr/local/share/edge_driver", "GITHUB_RUN_ID=11278839340", "GHCUP_INSTALL_BASE_PREFIX=/usr/local", "ImageOS=ubuntu22", "NVM_DIR=/home/runner/.nvm", "GIT_SSH_COMMAND=ssh -F /tmp/jl_V8t7FJ", "GITHUB_HEAD_REF=", "GITHUB_RETENTION_DAYS=90", "GITHUB_SERVER_URL=https://github.com", "GITHUB_OUTPUT=/home/runner/work/_temp/_runner_file_commands/set_output_12897091-ffbe-43ed-82da-a82804aa45e8", "STATS_UE=true", "STATS_BLT=true", "GITHUB_JOB=docs", "DEBIAN_FRONTEND=noninteractive", "RUNNER_TRACKING_ID=github_5b3fb3b0-e178-43cb-9acf-d029a70e5463", "RUNNER_TOOL_CACHE=/opt/hostedtoolcache", "HOMEBREW_CLEANUP_PERIODIC_FULL_DAYS=3650", "AZURE_EXTENSION_DIR=/opt/az/azcliextensions", "HOMEBREW_NO_AUTO_UPDATE=1", "CHROMEWEBDRIVER=/usr/local/share/chromedriver-linux64", "GITHUB_ACTION_REPOSITORY=", "GITHUB_WORKFLOW=CI", "GITHUB_ACTION=__julia-actions_julia-docdeploy", "HOME=/home/runner", "JAVA_HOME_8_X64=/usr/lib/jvm/temurin-8-jdk-amd64", "GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json", "GITHUB_STEP_SUMMARY=/home/runner/work/_temp/_runner_file_commands/step_summary_12897091-ffbe-43ed-82da-a82804aa45e8", "SGX_AESM_ADDR=1", "GITHUB_REF=refs/heads/main", "GIT_EXEC_PATH=/home/runner/.julia/artifacts/0abefbe87d3e3a7286442098fb54c2ed70b0486c/libexec/git-core", "GITHUB_REPOSITORY=MurrellGroup/ProteinChains.jl", "INVOCATION_ID=9
Documentation
Process completed with exit code 1.
Julia 1.10 - ubuntu-latest - x64 - push
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Julia pre - ubuntu-latest - x64 - push
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/html/HTMLWriter.jl#L2264
Unexpected Julia interpolation in the Markdown. This probably means that you have an unbalanced or un-escaped $ in the text. To write the dollar sign, escape it with `\$` We don't have the file or line number available, but we got given the value: `MAX_CACHE_ENTRIES` which is of type `Symbol`