Update installation instructions for Macs, min version of rastermap #1009
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
By setting the env var
CONDA_SUBDIR=osx-64
, I think that using iTerm with Rosetta is no longer needed. Without it, I was able topip install "suite2p[all]"
on my Mac M1 and run it with images in an h5 file (an nwb file) just fine. So I simplified the instructions for Mac M1 machines.I reverted the note about scanimage-tiff-reader mac incompatibility. The latest release 1.4.1.4 adds support for Mac M1. See https://gitlab.com/vidriotech/scanimagetiffreader-python/-/commit/9f4de14aa3186b0643608c5d203890f2ca1a8172 . I don't know if there was a separate issue with non-M1 macs, but I could install suite2p on both a Mac with Apple Silicon and one with an Intel processor. Fix add scanimage-tiff-reader as a dependency again #981.
I updated the minimum version of rastermap to one that supports
from rastermap.rastermap import Rastermap
My editor removes trailing spaces at the end of lines automatically...