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Re-add connected to GUI options
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hmacomber committed Jul 24, 2023
1 parent 9808eca commit 44029fd
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions suite2p/gui/rungui.py
Original file line number Diff line number Diff line change
Expand Up @@ -119,8 +119,9 @@ def create_buttons(self):
nrkeys = [["nonrigid", "block_size", "snr_thresh", "maxregshiftNR"],
["1Preg", "spatial_hp_reg", "pre_smooth", "spatial_taper"]]
cellkeys = [
"roidetect", "sparse_mode", "denoise", "spatial_scale", "threshold_scaling",
"max_overlap", "max_iterations", "high_pass", "spatial_hp_detect"
"roidetect", "sparse_mode", "denoise", "spatial_scale", "connected",
"threshold_scaling", "max_overlap", "max_iterations", "high_pass",
"spatial_hp_detect"
]
anatkeys = [
"anatomical_only", "diameter", "cellprob_threshold", "flow_threshold",
Expand Down Expand Up @@ -177,6 +178,7 @@ def create_buttons(self):
"if 1, run sparse_mode cell detection",
"if 1, run PCA denoising on binned movie to improve cell detection",
"choose size of ROIs: 0 = multi-scale; 1 = 6 pixels, 2 = 12, 3 = 24, 4 = 48",
"whether or not to require ROIs to be fully connected (set to 0 for dendrites/boutons)",
"adjust the automatically determined threshold for finding ROIs by this scalar multiplier",
"ROIs with greater than this overlap as a fraction of total pixels will be discarded",
"maximum number of iterations for ROI detection",
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