add new APs

hvtnFlow/resources/queries/flow/AnalysisPlan062.sql

@@ -0,0 +1,67 @@
+/*
+ * Copyright (c) 2015 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+SELECT
+--A._sample.property.NETWORK as NETWORK,
+A.NETWORK,
+A.PROTOCOL,
+A.LABID,
+A.ASSAY,
+A.ASSAY_METHOD,
+A.ASSAYID,
+A._well.Run AS FLOWJO_XML_FILENAME,
+A._fcsfile AS FCS_FILENAME,
+A.SPECROLE,
+A.PTID,
+A.GUSPEC,
+--A._sample.property.PTIDTYPE as PTIDTYPE,
+A.PTIDTYPE,
+A.SPECTYPE,
+A.ISOLATION,
+A.ADDITIVE,
+A.CRYOSTAT,
+A.CTRSAMPNAME,
+A.STDY_DESC,
+A.VISITNO,
+A.DRAWDT,
+A.TESTDT,
+A.PLATE,
+A.SAMP_ORD,
+A.WELL_ID,
+A.ANTIGEN,
+NULL AS ANTIGENID,
+A.NREPL,
+A.ANALYSIS_PLAN_ID,
+A.EXP_ASSAY_ID,
+A.COLLECTCT,
+A.SUBSET1 AS SUBSET,
+A.SUBSET1_NUM AS SUBSET_NUM,
+
+A.NUMVIALS,
+A.RUNGROUPID AS GUAVA_MUSE_ID,
+A.VIABL1,
+A.RECOVR1,
+A.VIABL2,
+A.RECOVR2,
+A.METHOD AS COUNT_METHOD,
+A.REPLACE,
+A.MODDT,
+A.RUNNUM,
+A.RELIABLE,
+A.COMMENTS,
+A._well @hidden, A._fcsfile @hidden, A._sample @hidden
+
+FROM AnalysisPlanTemplate A
+WHERE A.ANALYSIS_PLAN_ID = '62'

hvtnFlow/resources/queries/flow/AnalysisPlan073.sql

@@ -0,0 +1,69 @@
+/*
+ * Copyright (c) 2015 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+SELECT
+--A._sample.property.NETWORK as NETWORK,
+A.NETWORK,
+A.PROTOCOL,
+A.LABID,
+A.ASSAY,
+A.ASSAY_METHOD,
+A.ASSAYID,
+A._well.Run AS FLOWJO_XML_FILENAME,
+A._well AS FCS_FILENAME,
+A.SPECROLE,
+A.PTID,
+A.SID,
+A.GUSPEC,
+--A._sample.property.PTIDTYPE as PTIDTYPE,
+A.PTIDTYPE,
+A.SPECTYPE,
+A.ISOLATION,
+A.ADDITIVE,
+A.CRYOSTAT,
+A.CTRSAMPNAME,
+A.STDY_DESC,
+A.VISITNO,
+A.DRAWDT,
+A.TESTDT,
+A.PLATE,
+A.SAMP_ORD,
+A.WELL_ID,
+A.WELLROLE,
+A.ANTIGEN,
+NULL AS ANTIGENID,
+A.NREPL,
+A.ANALYSIS_PLAN_ID,
+A.EXP_ASSAY_ID,
+A.COLLECTCT,
+A.SUBSET1 AS SUBSET,
+A.SUBSET1_NUM AS SUBSET_NUM,
+
+A.NUMVIALS,
+A.RUNGROUPID AS GUAVA_MUSE_ID,
+A.VIABL1,
+A.RECOVR1,
+A.VIABL2,
+A.RECOVR2,
+A.METHOD AS COUNT_METHOD,
+A.REPLACE,
+A.MODDT,
+A.RUNNUM,
+A.RELIABLE,
+A.COMMENTS,
+A._well @hidden, A._fcsfile @hidden, A._sample @hidden
+
+FROM AnalysisPlanTemplate A
+WHERE A.ANALYSIS_PLAN_ID = '73'

hvtnFlow/resources/queries/flow/AnalysisPlan074.sql

@@ -0,0 +1,69 @@
+/*
+ * Copyright (c) 2015 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+SELECT
+--A._sample.property.NETWORK as NETWORK,
+A.NETWORK,
+A.PROTOCOL,
+A.LABID,
+A.ASSAY,
+A.ASSAY_METHOD,
+A.ASSAYID,
+A._well.Run AS FLOWJO_XML_FILENAME,
+REPLACE(A._well.Name, '.fcs', '') AS FCS_FILENAME,
+A.SPECROLE,
+A.PTID,
+A.SID,
+A.GUSPEC,
+--A._sample.property.PTIDTYPE as PTIDTYPE,
+A.PTIDTYPE,
+A.SPECTYPE,
+A.ISOLATION,
+A.ADDITIVE,
+A.CRYOSTAT,
+A.CTRSAMPNAME,
+A.STDY_DESC,
+A.VISITNO,
+A.DRAWDT,
+A.TESTDT,
+A.PLATE,
+A.SAMP_ORD,
+A.WELL_ID,
+A.WELLROLE,
+A.ANTIGEN,
+NULL AS ANTIGENID,
+A.NREPL,
+A.ANALYSIS_PLAN_ID,
+A.EXP_ASSAY_ID,
+A.COLLECTCT,
+A.SUBSET1 AS SUBSET,
+A.SUBSET1_NUM AS SUBSET_NUM,
+
+A.NUMVIALS,
+A.RUNGROUPID AS GUAVA_MUSE_ID,
+A.VIABL1,
+A.RECOVR1,
+A.VIABL2,
+A.RECOVR2,
+A.METHOD AS COUNT_METHOD,
+A.REPLACE,
+A.MODDT,
+A.RUNNUM,
+A.RELIABLE,
+A.COMMENTS,
+A._well @hidden, A._fcsfile @hidden, A._sample @hidden
+
+FROM AnalysisPlanTemplate A
+WHERE A.ANALYSIS_PLAN_ID = '74'