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MRI-adaptivity #564

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MRI-adaptivity #564

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Commits on Jul 24, 2024

  1. Initial merge with rebased 'develop' branch -- I'm still ironing out … 

    …some issues
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    drreynolds committed Jul 24, 2024
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Commits on Jul 25, 2024

  1. Fixed coefficients for MRI-GARK-ERK45a (from Sandu's corrected manusc… 

    …ript on arXiv)
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Commits on Jul 26, 2024

  1. Documentation updates

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  2. Documentation updates

    @drreynolds
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  3. Documentation updates

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  4. Documentation updates

    @drreynolds
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  5. Renamed type enum for MRI coupling tables

    @drreynolds
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  6. Documentation updates

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  7. Update default RK methods by order

    @Steven-Roberts
    Steven-Roberts committed Jul 26, 2024
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  8. Merge branch 'develop' into feature/rk_defaults

    @Steven-Roberts
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  9. Documentation updates

    @drreynolds
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  10. Add 5th order ERK of Tsitouras

    @Steven-Roberts
    Steven-Roberts committed Jul 26, 2024
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  11. Add FSAL 2nd order Ralston method

    @Steven-Roberts
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  12. Add Ralston to table in def file

    @Steven-Roberts
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  13. Update Fortran interfaces

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    Steven-Roberts committed Jul 26, 2024
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Commits on Jul 30, 2024

  1. Added documentation for MRIHTol controller

    @drreynolds
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  2. Minor fix for default value

    @drreynolds
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  3. Merge branch 'feature/mri-adaptivity' of github.com:LLNL/sundials int… 

    …o feature/mri-adaptivity
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Commits on Aug 1, 2024

  1. Merge branch 'feature/rk_defaults' of github.com:LLNL/sundials into f… 

    …eature/mri-adaptivity
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Commits on Aug 19, 2024

  1. Added control over slow time scale adaptivity safety factor

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Commits on Aug 21, 2024

  1. Updated accuracy calculation for mri-adaptivity test problems.

    @drreynolds
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  2. merged upstream changes

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Commits on Aug 27, 2024

  1. Removed logging from reference solver

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Commits on Aug 28, 2024

  1. Ran code formatter; added initial implementation for MRIStep to serve… 

    … as its own inner stepper
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Commits on Aug 30, 2024

  1. Minor cleanup

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  2. Added nested MRI test

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  3. Updated double-step fast error accumulation formula

    @drreynolds
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  4. Merge branch 'feature/mri-adaptivity' of github.com:LLNL/sundials int… 

    …o feature/mri-adaptivity
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Commits on Sep 5, 2024

  1. Initial pass at removing MRI-Hh controllers

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  2. Fixed IMEX-MRI-SR method names

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  3. Ran code formatter

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  4. Ran spell checker

    @drreynolds
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  5. Removed some residual references to SUNADAPTCONTROLLER_MRI_H

    @drreynolds
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  6. Merged upstream changes from develop

    @drreynolds
    drreynolds committed Sep 5, 2024
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  7. Fixed spelling

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  8. Fixed spelling

    @drreynolds
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  9. Added SUNDIALS_MAYBE_UNUSED

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  10. Patched formatting

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  11. Fixed SUNDIALS_MAYBE_UNUSED

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  12. Added SUNDIALS_MAYBE_UNUSED

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  13. Formatting update

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  14. Included <string>

    @drreynolds
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  15. Fixed more unused variable warnings/errors

    @drreynolds
    drreynolds committed Sep 5, 2024
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  16. Fixed conversion error/warning

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  17. Formatting updates

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Commits on Sep 6, 2024

  1. Propagated Steven's changes in default ERK methods from ARKStep to ER… 

    …KStep
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  2. Removed changesets from PR #547

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  3. Resolved some uninitialized and sign-compare warnings

    @drreynolds
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  4. Resolved formatting 'error'

    @drreynolds
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  5. Resolved unused-variable 'error'

    @drreynolds
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  6. Resolved conversion and sign comparision 'errors'

    @drreynolds
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  7. Formatting

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  8. Resolved unused-variable 'errors'

    @drreynolds
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  9. Resolved unused-function 'errors'

    @drreynolds
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  10. Resolved unused-function 'error'

    @drreynolds
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  11. Resolved conversion 'error'

    @drreynolds
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  12. Formatting

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  13. Moved some new examples and unit tests to require double precision

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  14. Formatting

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  15. Moved a few more examples to require double precision

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Commits on Sep 8, 2024

  1. Fixed bug wherein MRI-GARK methods mistakenly 'reset' the inner solve… 

    …r on every stage
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Commits on Sep 10, 2024

  1. Updated changelog to include fix for loading default higher-order IME… 

    …X-MRI methods
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  2. Updated answer repository branch/commit

    @drreynolds
    drreynolds committed Sep 10, 2024
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  3. Merge branch 'feature/mri-adaptivity' of github.com:LLNL/sundials int… 

    …o feature/mri-adaptivity
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Commits on Sep 11, 2024

  1. Merged upstream changes from develop

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  2. Fixed duplicate documentation label

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    drreynolds committed Sep 11, 2024
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  3. Fixed missing line to set fn_is_current to SUNTRUE

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  4. Updated submodule commit

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  5. Merge branch 'feature/mri-adaptivity' of github.com:LLNL/sundials int… 

    …o feature/mri-adaptivity
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  6. Updated submodule commit

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  7. Updated handling for inclusion of test_utilities.hpp file

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  8. Added test/unit_tests/utilities to scripts/shared

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Commits on Sep 12, 2024

  1. update output files

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  2. Merged in changes from develop

    @drreynolds
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  3. Moved check for controller type to only occur for adaptive runs

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  4. minor fix

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  5. formatting

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Commits on Sep 17, 2024

  1. Merged in changes from develop

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Commits on Sep 19, 2024

  1. Fixed error in ark_brusselator1D_FEM_sludist (needed to initialize th… 

    …e stepper before calling rfun)
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Commits on Sep 20, 2024

  1. Updated answers repository commit

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  2. Added guard against one extraneous fullrhs call

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  3. update output files

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  4. update f2003 outputs

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Commits on Sep 26, 2024

  1. Added MERK and IMEX-MRI-SR methods to recent changes files

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  2. Applied changes suggested in code review

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  3. Applied changes suggested in code review

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  4. Applied changes suggested in code review

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  5. Applied suggestions from code review

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  6. Minor documentation fix

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  7. Added embedding for Ralston 3 method

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Commits on Sep 27, 2024

  1. Updated examples according to PR recommendations

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  2. Formatting

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  3. Updated answers submodule

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  4. Updated answers submodule

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  5. Converted accumulated error options to an enumerated type

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  6. Reverted some examples back to run on single-precision CI jobs

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  7. formatting

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  8. Bugfix from conversion of AccumErrorType to enum

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  9. Formatting

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  10. Documentation fixes

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  11. Fixed one more bug in changing accumulated error type to enum; create… 

    …d ARKODE-level utility routine to create MRIStepInnerStepper
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  12. Updated some .out files

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  13. Formatting; swig

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  14. Apparently I have to run swig twice?

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  15. Updated answers submodule

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  16. Updated answers submodule

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  17. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
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  18. Reverted one more test to be included in the single-precision CI tests

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  19. Removed that single-precision CI test since it fails due to insuffici… 

    …ent accuracy in the fast solver due to single-precision arithmetic
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    drreynolds committed Sep 27, 2024
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Commits on Sep 28, 2024

  1. Converted first argument of ARKTimestepSetForcingFn to ARKodeMem type… 

    … instead of void*
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  2. Updated documentation formatting for custom MRI inner stepper function

    @drreynolds
    drreynolds committed Sep 28, 2024
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  3. Fixed copy/paste error for version where ARKodeCreateMRIStepInnerStep… 

    …per was added
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    drreynolds committed Sep 28, 2024
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  4. Fixed erroneous return

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    drreynolds committed Sep 28, 2024
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  5. formatting

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    drreynolds committed Sep 28, 2024
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Commits on Oct 1, 2024

  1. Merge branch 'develop' into feature/mri-adaptivity

    @gardner48
    gardner48 authored Oct 1, 2024
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  2. Updated SUNAdaptController_MRIHTol structure to remove leading unders… 

    …core
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    drreynolds committed Oct 1, 2024
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  3. Removed MRIStepSetAdaptController (converted to internal arkode stepp… 

    …er-provided function)
    @drreynolds
    drreynolds committed Oct 1, 2024
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  4. Minor documentation fixes

    @drreynolds
    drreynolds committed Oct 1, 2024
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  5. Minor documentation fix

    @drreynolds
    drreynolds committed Oct 1, 2024
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  6. formatting

    @drreynolds
    drreynolds committed Oct 1, 2024
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  7. Removed unused variables

    @drreynolds
    drreynolds committed Oct 1, 2024
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  8. Removed unused variables

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    drreynolds committed Oct 1, 2024
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  9. Table formatting fix

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    drreynolds committed Oct 1, 2024
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  10. Minor formatting fixes

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    drreynolds committed Oct 1, 2024
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Commits on Oct 2, 2024

  1. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
    drreynolds authored Oct 2, 2024
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  2. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
    drreynolds authored Oct 2, 2024
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Commits on Oct 3, 2024

  1. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
    drreynolds authored Oct 3, 2024
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Commits on Oct 4, 2024

  1. Applied suggestions from code review

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    drreynolds committed Oct 4, 2024
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  2. Apply suggestion from code review 

    Co-authored-by: Steven Roberts <[email protected]>
    @drreynolds @Steven-Roberts
    drreynolds and Steven-Roberts authored Oct 4, 2024
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  3. Fix formatting introduced in PR suggestion

    @drreynolds
    drreynolds committed Oct 4, 2024
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  4. Updated answers repository commit

    @drreynolds
    drreynolds committed Oct 4, 2024
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  5. Added comment regarding order of MERK54 method

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    drreynolds committed Oct 4, 2024
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  6. Changed default embedded second-order MRI-GARK method to ARKODE_MRI_G… 

    …ARK_ERK22b (to match fixed-step default)
    @drreynolds
    drreynolds committed Oct 4, 2024
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  7. Swig

    @drreynolds
    drreynolds committed Oct 4, 2024
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  8. Fixed docs build error (apparently, you cannot :cite: inside a table … 

    …caption?)
    @drreynolds
    drreynolds committed Oct 4, 2024
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  9. revise MRIStep mathmatics section

    @gardner48
    gardner48 committed Oct 4, 2024
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  10. notational consistency

    @gardner48
    gardner48 committed Oct 4, 2024
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  11. wrap long line

    @gardner48
    gardner48 committed Oct 4, 2024
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Commits on Oct 10, 2024

  1. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
    drreynolds authored Oct 10, 2024
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Commits on Oct 14, 2024

  1. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
    drreynolds authored Oct 14, 2024
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Commits on Oct 15, 2024

  1. Merge branch 'develop' into feature/mri-adaptivity

    @drreynolds
    drreynolds authored Oct 15, 2024
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  2. Merged with upstream changes to develop

    @drreynolds
    drreynolds committed Oct 15, 2024
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