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LBragg/Acacia
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***(%%%%%)*\\********************************************** ****(%%%) _/\\********************************************* ******** _\\_ \\ ___************************************** ******* / | \\\//** \/\''\*** _____ * ****** / | /(%%%)**/ \ \** (, / | , * ****** \ | /(%%%%%)*\ \ \* /---| _ _ _ _ * ******* \ / (%%%%%)**\ \ |* ) / |_(__(_(_(___(_(_(_ * ******** \/***(%%%)\\**\ | |*(_/ * ********************\\**\ |/** * ******************** \\**\/******************************** *********************************************************** SOFTWARE Acacia SOFTWARE 1.53-b0 (Release 1.53) Software by Lauren Bragg and Glenn Stone 2010-2014 Contact: [email protected] INSTALLATION NOTES See associated documentation for running this program. This release consists of feature improvement and bug fixes (sorry -- no Ion Torrent correction yet, their new BAM format has some issues). NEW FEATURES #1 Can now perform hexamer clustering in Acacia without correction (using the "CLUSTER_ONLY=TRUE" flag). This allows you to run Acacia on each cluster separately, minimising the maximum memory required and allowing the processing to be distributed across threads and/or cluster nodes. If you need help distributing your run across threads, please contact Lauren. BUG FIXES #1 Acacia can now use input files larger than 2GB (thanks for spotting this, Henning Seedorf). #2 Addressed Bug (GitHub #3) -- buttons truncated in GUI KNOWN ISSUES (that will be addressed in a future release) #1 Not all parameters are available through the GUI interface, this will be amended in future versions of Acacia