Fix MAGE-TAB to JSON converter service #10

ISA-tools · Jun 15, 2017 · 11fef24 · 11fef24
1 parent b3822e4
commit 11fef24
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/isarest.py b/isarest.py
@@ -825,7 +825,8 @@ def post(self):
  src_dir = os.path.normpath(tmp_dir)
  files = [f for f in os.listdir(src_dir) if f.endswith('.idf.txt')]
  if len(files) == 1:
- J = magetab2json.convert(os.path.join(src_dir, files[0]), 'protein microarray', 'protein expression profiling')
+ with open(os.path.join(src_dir, files[0])) as source_fp:
+ J = magetab2json.convert(source_fp, 'protein microarray', 'protein expression profiling')
  if J is None:
  raise IOError("Could not generate JSON from input MAGE-TAB")
  except Exception as e: