first changes to make the docker works with #37
Workflow file for this run
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| name: ci_pytest | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v4 | |
| # See https://github.com/marketplace/actions/setup-micromamba | |
| - name: setup-micromamba | |
| uses: mamba-org/[email protected] | |
| with: | |
| micromamba-version: '1.5.8-0' # temporary fix as setup-mircomamba hangs with later mamba version | |
| environment-file: environment.yml | |
| environment-name: patchwork # activate the environment | |
| cache-environment: true | |
| cache-downloads: true | |
| generate-run-shell: true | |
| - name: Run tests with pytest | |
| shell: micromamba-shell {0} | |
| run: python -m pytest ./test -s --log-cli-level DEBUG |