[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -2,40 +2,40 @@ ci:
  autoupdate_schedule: 'quarterly'
 repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
- rev: v4.1.0
+ rev: v4.6.0
  hooks:
  - id: check-docstring-first
  - id: end-of-file-fixer
  - id: trailing-whitespace
  - repo: https://github.com/asottile/setup-cfg-fmt
- rev: v1.20.1
+ rev: v2.5.0
  hooks:
  - id: setup-cfg-fmt
  - repo: https://github.com/PyCQA/flake8
- rev: 4.0.1
+ rev: 7.1.0
  hooks:
  - id: flake8
  additional_dependencies: [flake8-typing-imports==1.7.0]
- - repo: https://github.com/myint/autoflake
- rev: v1.4
+ - repo: https://github.com/PyCQA/autoflake
+ rev: v2.3.1
  hooks:
  - id: autoflake
  args: ["--in-place", "--remove-all-unused-imports", "--ignore-init-module-imports", "--remove-unused-variables"]
  - repo: https://github.com/PyCQA/isort
- rev: 5.10.1
+ rev: 5.13.2
  hooks:
  - id: isort
  - repo: https://github.com/psf/black
- rev: 22.3.0
+ rev: 24.4.2
  hooks:
  - id: black
  - repo: https://github.com/asottile/pyupgrade
- rev: v2.31.1
+ rev: v3.16.0
  hooks:
  - id: pyupgrade
  args: [--py37-plus]
  - repo: https://github.com/codespell-project/codespell
- rev: v2.1.0
+ rev: v2.3.0
  hooks:
  - id: codespell
  args: [--ignore-words-list, hist]

microutil/__init__.py

@@ -1,4 +1,5 @@
 """All the Utilities :)"""
+
 # Must import __version__ first to avoid errors importing this file during the build process.
 # See https://github.com/pypa/setuptools/issues/1724#issuecomment-627241822
 from ._version import __version__

microutil/_unet.py

@@ -2,6 +2,7 @@
 This function in this file is taken based on and/or taken from https://github.com/lpbsscientist/YeaZ-GUI
 which is under the MIT license.
 """
+
 # Import tensorflow differently depending on version
 from tensorflow import __version__ as tf_version
 from tensorflow.keras.layers import (

microutil/leica/__init__.py

@@ -1,4 +1,5 @@
 """
 Utilities for loading from a leica scope
 """
+
 from .leica import *

microutil/single_cell/__init__.py

@@ -1,4 +1,5 @@
 """
 Operations for doing math over single cells in a timeseries
 """
+
 from .single_cell import *

setup.cfg

@@ -7,7 +7,7 @@ url = https://github.com/Hekstra-Lab/microutil
 author = Ian Hunt-Isaak, John Russell
 author_email = [email protected], [email protected]
 license = BSD-3-Clause
-license_file = LICENSE
+license_files = LICENSE
 platforms = Linux, Mac OS X, Windows
 classifiers =
  Intended Audience :: Developers
@@ -16,11 +16,6 @@ classifiers =
  Programming Language :: Python
  Programming Language :: Python :: 3
  Programming Language :: Python :: 3 :: Only
- Programming Language :: Python :: 3.6
- Programming Language :: Python :: 3.7
- Programming Language :: Python :: 3.8
- Programming Language :: Python :: 3.9
- Programming Language :: Python :: 3.10
 
 [options]
 packages = find:
@@ -38,7 +33,7 @@ install_requires =
  tifffile
  xarray
  zarr
-python_requires = >=3.6
+python_requires = >=3.8
 
 [options.extras_require]
 all =