Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add load_mercury_relief to load Mercury relief dataset in various resolutions and registrations #3028

Merged
merged 4 commits into from
Feb 1, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions doc/api/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -227,6 +227,7 @@ and store them in GMT's user data directory.
datasets.load_earth_relief
datasets.load_earth_vertical_gravity_gradient
datasets.load_mars_relief
datasets.load_mercury_relief
datasets.load_moon_relief
datasets.load_pluto_relief
datasets.load_venus_relief
Expand Down
1 change: 1 addition & 0 deletions pygmt/datasets/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@
load_earth_vertical_gravity_gradient,
)
from pygmt.datasets.mars_relief import load_mars_relief
from pygmt.datasets.mercury_relief import load_mercury_relief
from pygmt.datasets.moon_relief import load_moon_relief
from pygmt.datasets.pluto_relief import load_pluto_relief
from pygmt.datasets.samples import list_sample_data, load_sample_data
Expand Down
21 changes: 21 additions & 0 deletions pygmt/datasets/load_remote_dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -272,6 +272,27 @@ class GMTRemoteDataset(NamedTuple):
"14s": Resolution("14s", registrations=["pixel"], tiled=True),
},
),
"mercury_relief": GMTRemoteDataset(
title="Mercury relief",
name="mercury_relief",
long_name="USGS Mercury relief",
units="meters",
extra_attributes={},
resolutions={
"01d": Resolution("01d"),
"30m": Resolution("30m"),
"20m": Resolution("20m"),
"15m": Resolution("15m"),
"10m": Resolution("10m"),
"06m": Resolution("06m"),
"05m": Resolution("05m", tiled=True),
"04m": Resolution("04m", tiled=True),
"03m": Resolution("03m", tiled=True),
"02m": Resolution("02m", tiled=True),
"01m": Resolution("01m", tiled=True),
"56s": Resolution("56s", registrations=["pixel"], tiled=True),
},
),
"pluto_relief": GMTRemoteDataset(
title="Pluto relief",
name="pluto_relief",
Expand Down
104 changes: 104 additions & 0 deletions pygmt/datasets/mercury_relief.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,104 @@
"""
Function to download the Mercury relief dataset from the GMT data server, and load as
:class:`xarray.DataArray`.

The grids are available in various resolutions.
"""
from typing import Literal

from pygmt.datasets.load_remote_dataset import _load_remote_dataset
from pygmt.helpers import kwargs_to_strings

__doctest_skip__ = ["load_mercury_relief"]


@kwargs_to_strings(region="sequence")
def load_mercury_relief(
resolution="01d",
region=None,
registration: Literal["gridline", "pixel", None] = None,
):
r"""
Load the Mercury relief dataset in various resolutions.

.. figure:: https://www.generic-mapping-tools.org/remote-datasets/_images/GMT_mercury_relief.jpg
:width: 80%
:align: center

Mercury relief dataset.

The grids are downloaded to a user data directory (usually
``~/.gmt/server/mercury/mercury_relief/``) the first time you invoke this function.
Afterwards, it will load the grid from the data directory. So you'll need an
internet connection the first time around.

These grids can also be accessed by passing in the file name
**@mercury_relief**\_\ *res*\[_\ *reg*] to any grid processing function or plotting
method. *res* is the grid resolution (see below), and *reg* is the grid registration
type (**p** for pixel registration or **g** for gridline registration).

The default color palette table (CPT) for this dataset is *@mercury_relief.cpt*.
It's implicitly used when passing in the file name of the dataset to any grid
plotting method if no CPT is explicitly specified. When the dataset is loaded and
plotted as an :class:`xarray.DataArray` object, the default CPT is ignored, and
GMT's default CPT (*turbo*) is used. To use the dataset-specific CPT, you need to
explicitly set ``cmap="@mercury_relief.cpt"``.

Refer to :gmt-datasets:`mercury-relief.html` for more details about available
datasets, including version information and references.

Parameters
----------
resolution : str
The grid resolution. The suffix ``d``, ``m`` and ``s`` stand for arc-degrees,
arc-minutes and arc-seconds. It can be ``"01d"``, ``"30m"``, ``"20m"``,
``"15m"``, ``"10m"``, ``"06m"``, ``"05m"``, ``"04m"``, ``"03m"``, ``"02m"``,
``"01m"``, and ``"56s"``.
region : str or list
The subregion of the grid to load, in the form of a list
[*xmin*, *xmax*, *ymin*, *ymax*] or a string *xmin/xmax/ymin/ymax*. Required for
grids with resolutions higher than 5 arc-minutes (i.e., ``"05m"``).
registration
Grid registration type. Either ``"pixel"`` for pixel registration or
``"gridline"`` for gridline registration. Default is ``None``, means
``"gridline"`` for all resolutions except for ``"56s"`` which is ``"pixel"``
only.

Returns
-------
grid : :class:`xarray.DataArray`
The Mercury relief grid. Coordinates are latitude and longitude in degrees.
Relief is in meters.

Note
----
The registration and coordinate system type of the returned
:class:`xarray.DataArray` grid can be accessed via the GMT accessors (i.e.,
``grid.gmt.registration`` and ``grid.gmt.gtype`` respectively). However, these
properties may be lost after specific grid operations (such as slicing) and will
need to be manually set before passing the grid to any PyGMT data processing or
plotting functions. Refer to :class:`pygmt.GMTDataArrayAccessor` for detailed
explanations and workarounds.

Examples
--------
>>> from pygmt.datasets import load_mercury_relief
>>> # load the default grid (gridline-registered 1 arc-degree grid)
>>> grid = load_mercury_relief()
>>> # load the 30 arc-minutes grid with "gridline" registration
>>> grid = load_mercury_relief(resolution="30m", registration="gridline")
>>> # load high-resolution (5 arc-minutes) grid for a specific region
>>> grid = load_mercury_relief(
... resolution="05m",
... region=[120, 160, 30, 60],
... registration="gridline",
... )
"""
grid = _load_remote_dataset(
dataset_name="mercury_relief",
dataset_prefix="mercury_relief_",
resolution=resolution,
region=region,
registration=registration,
)
return grid
3 changes: 3 additions & 0 deletions pygmt/helpers/caching.py
Original file line number Diff line number Diff line change
Expand Up @@ -62,6 +62,9 @@ def cache_data():
# Mars relief grids
"@mars_relief_01d_g",
"@N00W030.mars_relief_01m_g.nc", # Specific grid for 01m tes
# Mercury relief grids
"@mercury_relief_01d_g",
"@N00W030.mercury_relief_01m_p.nc", # Specific grid for 01m test
# Moon relief grids
"@moon_relief_01d_g",
"@N00W030.moon_relief_01m_p.nc", # Specific grid for 01m test
Expand Down
51 changes: 51 additions & 0 deletions pygmt/tests/test_datasets_mercury_relief.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,51 @@
"""
Test basic functionality for loading Mercury relief datasets.
"""
import numpy as np
import numpy.testing as npt
from pygmt.datasets import load_mercury_relief


def test_mercury_relief_01d():
"""
Test some properties of the Mercury relief 01d data.
"""
data = load_mercury_relief(resolution="01d")
assert data.name == "mercury_relief"
assert data.attrs["units"] == "meters"
assert data.attrs["long_name"] == "USGS Mercury relief"
assert data.shape == (181, 361)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-90, 91, 1))
npt.assert_allclose(data.lon, np.arange(-180, 181, 1))
npt.assert_allclose(data.min(), -5103.5, atol=0.5)
npt.assert_allclose(data.max(), 3416.0, atol=0.5)


def test_mercury_relief_01d_with_region():
"""
Test loading low-resolution Mercury relief with 'region'.
"""
data = load_mercury_relief(resolution="01d", region=[-10, 10, -5, 5])
assert data.shape == (11, 21)
assert data.gmt.registration == 0
npt.assert_allclose(data.lat, np.arange(-5, 6, 1))
npt.assert_allclose(data.lon, np.arange(-10, 11, 1))
npt.assert_allclose(data.min(), -327.0, atol=0.5)
npt.assert_allclose(data.max(), 3027.5, atol=0.5)


def test_mercury_relief_01m_default_registration():
"""
Test that the grid returned by default for the 1 arc-minute resolution has
a "gridline" registration.
"""
data = load_mercury_relief(resolution="01m", region=[-10, -9, 3, 5])
assert data.shape == (121, 61)
assert data.gmt.registration == 0
assert data.coords["lat"].data.min() == 3.0
assert data.coords["lat"].data.max() == 5.0
assert data.coords["lon"].data.min() == -10.0
assert data.coords["lon"].data.max() == -9.0
npt.assert_allclose(data.min(), 1953.0, atol=0.5)
npt.assert_allclose(data.max(), 3721.0, atol=0.5)
Loading