The tRNA package allows feature information of tRNAs to be accessed and list of
tRNA to be subset based on these features. The main purpose is to unify
overlapping functions from the
tRNAscanImport and
tRNAdbImport packages.
The functionality is currently under development and may change. The package
expects a GRanges object with certain columns as input. The following columns
are a requirement: tRNA_length, tRNA_type, tRNA_anticodon, tRNA_seq,
tRNA_str, tRNA_CCA.end. Outputs of tRNAscanImport and tRNAdbImport meet
these requirements.
The current version of the tRNA package is available from Bioconductor.
BiocManager::install("tRNA")
# Load and attach thepackage
library("tRNA")
Have a look at the vignette for an overview of the functionality. Additional functions are planned to be added in the future.