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Mimetic Spectral Elements #29
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# Copyright (C) 2019 Chris Eldred (Inria Grenoble Rhone-Alpes) and Werner Bauer (Inria Rennes) | ||
# | ||
# This file is part of FIAT. | ||
# | ||
# FIAT is free software: you can redistribute it and/or modify | ||
# it under the terms of the GNU Lesser General Public License as published by | ||
# the Free Software Foundation, either version 3 of the License, or | ||
# (at your option) any later version. | ||
# | ||
# FIAT is distributed in the hope that it will be useful, | ||
# but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
# GNU Lesser General Public License for more details. | ||
# | ||
# You should have received a copy of the GNU Lesser General Public License | ||
# along with FIAT. If not, see <http://www.gnu.org/licenses/>. | ||
# | ||
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import sympy | ||
import numpy as np | ||
from FIAT.finite_element import FiniteElement | ||
from FIAT.dual_set import make_entity_closure_ids | ||
from FIAT.polynomial_set import mis | ||
from FIAT import quadrature | ||
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x = sympy.symbols('x') | ||
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def _lagrange_poly(i, xi): | ||
'''Returns the Langrange polynomial P_i(x) of pts xi | ||
which interpolates the values (0,0,..1,..,0) where 1 is at the ith support point | ||
:param i: non-zero location | ||
:param xi: set of N support points | ||
''' | ||
index = list(range(len(xi))) | ||
index.pop(i) | ||
return sympy.prod([(x-xi[j][0])/(xi[i][0]-xi[j][0]) for j in index]) | ||
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def _lagrange_basis(spts): | ||
symbas = [] | ||
for i in range(len(spts)): | ||
symbas.append(_lagrange_poly(i, spts)) | ||
return symbas | ||
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def _create_compatible_l2_basis(cg_symbas): | ||
ncg_basis = len(cg_symbas) | ||
symbas = [] | ||
for i in range(1, ncg_basis): | ||
basis = 0 | ||
for j in range(i): | ||
basis = basis + sympy.diff(-cg_symbas[j]) | ||
symbas.append(basis) | ||
return symbas | ||
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class _EdgeElement(FiniteElement): | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Why are all these names above starting with an underscore? Are they meant to be module private? My personal opinion is further development and refactoring may make you want to use function in other module, even though those functions were (originally) intended to be private. Such private -> public change then either introduces inconsistency (if the name is not changed), or introduces unnecessary name change which pollutes the diff at review. Most of the time one just imports what one needs anyway, and in those cases when |
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def __new__(cls, ref_el, degree): | ||
dim = ref_el.get_spatial_dimension() | ||
if dim == 1: | ||
self = super().__new__(cls) | ||
return self | ||
else: | ||
raise IndexError("only intervals supported for _IntervalElement") | ||
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def tabulate(self, order, points, entity=None): | ||
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if entity is None: | ||
entity = (self.ref_el.get_spatial_dimension(), 0) | ||
entity_dim, entity_id = entity | ||
dim = self.ref_el.get_spatial_dimension() | ||
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transform = self.ref_el.get_entity_transform(entity_dim, entity_id) | ||
points = list(map(transform, points)) | ||
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phivals = {} | ||
for o in range(order + 1): | ||
alphas = mis(dim, o) | ||
for alpha in alphas: | ||
try: | ||
basis = self.basis[alpha] | ||
except KeyError: | ||
basis = sympy.diff(self.basis[(0,)], x) | ||
self.basis[alpha] = basis | ||
T = np.zeros((len(basis), len(points))) | ||
for i in range(len(points)): | ||
subs = {x: points[i][0]} | ||
for j, f in enumerate(basis): | ||
T[j, i] = f.evalf(subs=subs) | ||
phivals[alpha] = T | ||
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return phivals | ||
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def degree(self): | ||
return self._degree | ||
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def get_nodal_basis(self): | ||
raise NotImplementedError("get_nodal_basis not implemented for _IntervalElement") | ||
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def get_dual_set(self): | ||
raise NotImplementedError("get_dual_set is not implemented for _IntervalElement") | ||
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def get_coeffs(self): | ||
raise NotImplementedError("get_coeffs not implemented for _IntervalElement") | ||
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def entity_dofs(self): | ||
"""Return the map of topological entities to degrees of | ||
freedom for the finite element.""" | ||
return self.entity_ids | ||
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def entity_closure_dofs(self): | ||
"""Return the map of topological entities to degrees of | ||
freedom on the closure of those entities for the finite element.""" | ||
return self.entity_closure_ids | ||
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def value_shape(self): | ||
return () | ||
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def dmats(self): | ||
raise NotImplementedError | ||
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def get_num_members(self, arg): | ||
raise NotImplementedError | ||
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def space_dimension(self): | ||
return len(self.basis[(0,)]) | ||
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def __init__(self, ref_el, degree): | ||
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dim = ref_el.get_spatial_dimension() | ||
topology = ref_el.get_topology() | ||
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if not dim == 1: | ||
raise IndexError("only intervals supported for DMSE") | ||
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formdegree = 1 | ||
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# This is general code to build empty entity_ids | ||
entity_ids = {} | ||
for dim in range(dim+1): | ||
entity_ids[dim] = {} | ||
for entity in sorted(topology[dim]): | ||
entity_ids[dim][entity] = [] | ||
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# The only dofs for DMSE are with the interval! | ||
entity_ids[dim][0] = list(range(degree + 1)) | ||
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# Build the basis | ||
# This is a dictionary basis[o] that gives the "basis" functions for derivative order o, where o=0 is just the basis itself | ||
# This is filled as needed for o > 0 by tabulate | ||
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self.entity_ids = entity_ids | ||
self.entity_closure_ids = make_entity_closure_ids(ref_el, entity_ids) | ||
self._degree = degree | ||
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super(_EdgeElement, self).__init__(ref_el=ref_el, dual=None, order=degree, formdegree=formdegree) | ||
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class EdgeGaussLobattoLegendre(_EdgeElement): | ||
def __init__(self, ref_el, degree): | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Some docstring would be nice. |
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super(EdgeGaussLobattoLegendre, self).__init__(ref_el, degree) | ||
cont_pts = quadrature.GaussLobattoLegendreQuadratureLineRule(ref_el, degree+2).pts | ||
cont_basis = _lagrange_basis(cont_pts) | ||
basis = _create_compatible_l2_basis(cont_basis) | ||
self.basis = {(0,): sympy.Array(basis)} | ||
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class EdgeExtendedGaussLegendre(_EdgeElement): | ||
def __init__(self, ref_el, degree): | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. docstring missing |
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super(EdgeExtendedGaussLegendre, self).__init__(ref_el, degree) | ||
cont_pts = quadrature.ExtendedGaussLegendreQuadratureLineRule(ref_el, degree+2).pts | ||
cont_basis = _lagrange_basis(cont_pts) | ||
basis = _create_compatible_l2_basis(cont_basis) | ||
self.basis = {(0,): sympy.Array(basis)} |
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# Copyright (C) 2019 Chris Eldred (Inria Grenoble Rhone-Alpes) and Werner Bauer (Inria Rennes) | ||
# | ||
# This file is part of FIAT. | ||
# | ||
# FIAT is free software: you can redistribute it and/or modify | ||
# it under the terms of the GNU Lesser General Public License as published by | ||
# the Free Software Foundation, either version 3 of the License, or | ||
# (at your option) any later version. | ||
# | ||
# FIAT is distributed in the hope that it will be useful, | ||
# but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
# GNU Lesser General Public License for more details. | ||
# | ||
# You should have received a copy of the GNU Lesser General Public License | ||
# along with FIAT. If not, see <http://www.gnu.org/licenses/>. | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. SPDX header line |
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# | ||
# Written by Chris Eldred (Inria Grenoble Rhone-Alpes) and Werner Bauer (Inria Rennes) 2019 | ||
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from FIAT import finite_element, polynomial_set, dual_set, functional, quadrature | ||
from FIAT.reference_element import LINE | ||
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class ExtendedGaussLegendreDualSet(dual_set.DualSet): | ||
"""The dual basis for 1D continuous elements with nodes at the | ||
Extended-Gauss-Legendre points.""" | ||
def __init__(self, ref_el, degree): | ||
entity_ids = {0: {0: [0], 1: [degree]}, | ||
1: {0: list(range(1, degree))}} | ||
lr = quadrature.ExtendedGaussLegendreQuadratureLineRule(ref_el, degree+1) | ||
nodes = [functional.PointEvaluation(ref_el, x) for x in lr.pts] | ||
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super(ExtendedGaussLegendreDualSet, self).__init__(nodes, ref_el, entity_ids) | ||
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class ExtendedGaussLegendre(finite_element.CiarletElement): | ||
"""1D continuous element with nodes at the Extended-Gauss-Legendre points.""" | ||
def __init__(self, ref_el, degree): | ||
if ref_el.shape != LINE: | ||
raise ValueError("Extended-Gauss-Legendre elements are only defined in one dimension.") | ||
poly_set = polynomial_set.ONPolynomialSet(ref_el, degree) | ||
dual = ExtendedGaussLegendreDualSet(ref_el, degree) | ||
formdegree = 0 # 0-form | ||
super(ExtendedGaussLegendre, self).__init__(poly_set, dual, degree, formdegree) |
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# Copyright (C) 2016 Imperial College London and others | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Probably incorrect copy-paste |
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# | ||
# This file is part of FIAT. | ||
# | ||
# FIAT is free software: you can redistribute it and/or modify | ||
# it under the terms of the GNU Lesser General Public License as published by | ||
# the Free Software Foundation, either version 3 of the License, or | ||
# (at your option) any later version. | ||
# | ||
# FIAT is distributed in the hope that it will be useful, | ||
# but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
# GNU Lesser General Public License for more details. | ||
# | ||
# You should have received a copy of the GNU Lesser General Public License | ||
# along with FIAT. If not, see <http://www.gnu.org/licenses/>. | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. SPDX header line |
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# | ||
# Authors: | ||
# | ||
# Christopher Eldred | ||
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import pytest | ||
import math | ||
import sympy | ||
import FIAT | ||
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x = sympy.symbols('x') | ||
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@pytest.mark.parametrize("degree", list(range(0, 7))) | ||
def test_gll_edge_basis_values(degree): | ||
"""Ensure that edge elements are histopolatory""" | ||
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s = FIAT.ufc_simplex(1) | ||
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fe = FIAT.EdgeGaussLobattoLegendre(s, degree) | ||
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basis = fe.basis[(0,)] | ||
cont_pts = FIAT.quadrature.GaussLobattoLegendreQuadratureLineRule(s, degree + 2).pts | ||
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for i in range(len(cont_pts)-1): | ||
for j in range(basis.shape[0]): | ||
int_sub = sympy.integrate(basis[j], (x, cont_pts[i][0], cont_pts[i+1][0])) | ||
if i == j: | ||
assert(math.isclose(int_sub, 1.)) | ||
else: | ||
assert(math.isclose(int_sub, 0., abs_tol=1e-9)) | ||
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@pytest.mark.parametrize("degree", list(range(2, 7))) | ||
def test_egl_edge_basis_values(degree): | ||
"""Ensure that edge elements are histopolatory""" | ||
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s = FIAT.ufc_simplex(1) | ||
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fe = FIAT.EdgeExtendedGaussLegendre(s, degree) | ||
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basis = fe.basis[(0,)] | ||
cont_pts = FIAT.quadrature.ExtendedGaussLegendreQuadratureLineRule(s, degree + 2).pts | ||
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for i in range(len(cont_pts)-1): | ||
for j in range(basis.shape[0]): | ||
int_sub = sympy.integrate(basis[j], (x, cont_pts[i][0], cont_pts[i+1][0])) | ||
if i == j: | ||
assert(math.isclose(int_sub, 1.)) | ||
else: | ||
assert(math.isclose(int_sub, 0., abs_tol=1e-9)) | ||
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if __name__ == '__main__': | ||
import os | ||
pytest.main(os.path.abspath(__file__)) | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. We normally don't add these anymore at the bottom of test files. |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
We are only insert SPDX header lines since #33.