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First porting of NEMO into the system #73

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First porting of NEMO into the system #73

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ea2e006
changes for bringing in nemo
Dec 1, 2022
c16077a
First porting of NEMO into the system
daniele-peano Dec 1, 2022
91f6e32
Change for reduced core use in Zeus
daniele-peano Dec 5, 2022
a864944
Merge branch 'feature/cmcc-cm3' of https://github.com/CMCC-Foundation…
daniele-peano Dec 5, 2022
ef66928
Update for alpha10c tag
daniele-peano Dec 9, 2022
3180b85
Update for alpha10c version
daniele-peano Dec 9, 2022
0014e60
Update ZEUS configuration
daniele-peano Dec 13, 2022
5228f18
Update fv0.47x0.63 Mesh file
daniele-peano Dec 13, 2022
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16 changes: 11 additions & 5 deletions component_grids_nuopc.xml
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Expand Up @@ -33,6 +33,11 @@
<mesh>$DIN_LOC_ROOT/share/meshes/0.125nldas2_ESMFmesh_cd5_241220.nc</mesh>
<desc>Regional NLDAS-2 grid over the U.S. (0.125 degree resolution; 25-53N, 235-293E)</desc>
</domain>
<domain name="0.47x0.63">
<nx>576</nx> <ny>384</ny>
<mesh>$DIN_LOC_ROOT/share/meshes/fv0.47x0.63_141008_FIX102722_polemod_ESMFMesh.nc</mesh>
<desc>0.47x0.63 is FV 1/2-deg grid:</desc>
</domain>
<domain name="0.9x1.25">
<nx>288</nx> <ny>192</ny>
<!-- This is needed for PTS_MODE - it specifies the xml variable PTS_DOMAINFILE -->
Expand Down Expand Up @@ -62,11 +67,6 @@
<desc>10x15 is FV 10-deg grid:</desc>
<support>For low resolution testing</support>
</domain>
<domain name="0.47x0.63">
<nx>576</nx> <ny>384</ny>
<mesh>$DIN_LOC_ROOT/share/meshes/fv0.47x0.63_141008_ESMFmesh.nc</mesh>
<desc>0.47x0.63 is FV 0.5-deg grid:</desc>
</domain>
<domain name="T5">
<nx>16</nx> <ny>8</ny>
<mesh>$DIN_LOC_ROOT/share/meshes/T5_ESMFmesh_cdf5_c20210923.nc</mesh>
Expand Down Expand Up @@ -342,6 +342,12 @@
<mesh>$DIN_LOC_ROOT/share/meshes/gx1v7_151008_ESMFmesh.nc</mesh>
<desc>gx1v7 is displaced Greenland pole 1-deg grid with Caspian as a land feature:</desc>
</domain>
<domain name="tn0.25v3">
<nx>1440</nx> <ny>1050</ny>
<!-- <mesh>$DIN_LOC_ROOT/share/meshes/tn0.25v3_160721_ESMFmesh.nc</mesh> -->
<mesh>$DIN_LOC_ROOT/share/scripgrids/tn0.25v3_160721.nc</mesh>
<desc>tn0.25v3 is NEMO ORCA1 tripole grid at 1/4 deg (reduced eORCA):</desc>
</domain>
<domain name="gx3v7">
<nx>100</nx> <ny>116</ny>
<mesh>$DIN_LOC_ROOT/share/meshes/gx3v7_120309_ESMFmesh.nc</mesh>
Expand Down
7 changes: 4 additions & 3 deletions machines/config_batch.xml
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Expand Up @@ -749,9 +749,10 @@
<batch_system MACH="zeus" type="lsf">
<batch_env>-env</batch_env>
<submit_args>
<argument> -q $JOB_QUEUE </argument>
<argument> -W $JOB_WALLCLOCK_TIME </argument>
<argument> -P $PROJECT </argument>
<arg flag="-q" name="$JOB_QUEUE"/>
<arg flag="-W" name="$JOB_WALLCLOCK_TIME"/>
<arg flag="-P" name="$PROJECT"/>
<arg flag="-x" />
</submit_args>
<directives>
<directive > -R "span[ptile={{ tasks_per_node }}]"</directive>
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16 changes: 10 additions & 6 deletions machines/config_machines.xml
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Expand Up @@ -3563,7 +3563,7 @@ This allows using a different mpirun command to launch unit tests

<machine MACH="zeus">
<DESC> CMCC Lenovo ThinkSystem SD530, os is Linux, 36 pes/node, batch system is LSF</DESC>
<NODENAME_REGEX>(login[1,2]-ib|n[0-9][0-9][0-9]-ib)</NODENAME_REGEX>
<NODENAME_REGEX>(login[1,2].cluster.net|n[0-9][0-9][0-9].cluster.net)</NODENAME_REGEX>
<OS>LINUX</OS>
<COMPILERS>intel</COMPILERS>
<MPILIBS>impi,mpi-serial</MPILIBS>
Expand All @@ -3579,7 +3579,7 @@ This allows using a different mpirun command to launch unit tests
<BATCH_SYSTEM>lsf</BATCH_SYSTEM>
<SUPPORTED_BY>cmcc</SUPPORTED_BY>
<MAX_TASKS_PER_NODE>72</MAX_TASKS_PER_NODE>
<MAX_MPITASKS_PER_NODE>36</MAX_MPITASKS_PER_NODE>
<MAX_MPITASKS_PER_NODE>30</MAX_MPITASKS_PER_NODE>
<PROJECT_REQUIRED>TRUE</PROJECT_REQUIRED>
<mpirun mpilib="default">
<executable> mpirun </executable>
Expand Down Expand Up @@ -3613,21 +3613,25 @@ This allows using a different mpirun command to launch unit tests
<command name="load">impi20.1/parallel-netcdf/1.12.1</command>
</modules>
<modules compiler="intel" mpilib="!mpi-serial" DEBUG="TRUE">
<command name="load">impi20.1/esmf/8.1.1-intelmpi-64-g</command>
<command name="load">impi20.1/esmf/8.2.0-intelmpi-64-g</command>
</modules>
<modules compiler="intel" mpilib="!mpi-serial" DEBUG="FALSE">
<command name="load">impi20.1/esmf/8.1.1-intelmpi-64-O</command>
<command name="load">impi20.1/esmf/8.2.0-intelmpi-64-O</command>
</modules>
<modules compiler="intel" mpilib="mpi-serial" DEBUG="TRUE">
<command name="load">intel20.1/esmf/8.1.1-mpiuni-64-g</command>
<command name="load">intel20.1/esmf/8.2.0-mpiuni-64-g</command>
</modules>
<modules compiler="intel" mpilib="mpi-serial" DEBUG="FALSE">
<command name="load">intel20.1/esmf/8.1.1-mpiuni-64-O</command>
<command name="load">intel20.1/esmf/8.2.0-mpiuni-64-O</command>
</modules>
</module_system>
<environment_variables>
<env name="XIOS_PATH">/data/inputs/CESM/xios-2.5</env>
</environment_variables>
<environment_variables comp_interface="nuopc">
<env name="ESMF_RUNTIME_PROFILE">ON</env>
<env name="ESMF_RUNTIME_PROFILE_OUTPUT">SUMMARY</env>
</environment_variables>
<environment_variables compiler="intel">
<env name="I_MPI_EXTRA_FILESYSTEM">1</env>
<env name="I_MPI_EXTRA_FILESYSTEM_FORCE">gpfs</env>
Expand Down
8 changes: 8 additions & 0 deletions maps_nuopc.xml
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Expand Up @@ -18,6 +18,10 @@
<map name="ROF2OCN_LIQ_RMAPNAME">cpl/gridmaps/rx1/map_rx1_to_gx1v7_nn_open_ocean_nnsm_e1000r300_marginal_sea_170413.nc</map>
<map name="ROF2OCN_ICE_RMAPNAME">cpl/gridmaps/rx1/map_rx1_to_gx1v7_nnsm_e1000r300_170413.nc</map>
</gridmap>
<gridmap rof_grid="rx1" ocn_grid="tn0.25v3" >
<map name="ROF2OCN_LIQ_RMAPNAME">cpl/cpl6/map_rx1_to_tn0.25v3_e1000r300_160721.nc</map>
<map name="ROF2OCN_ICE_RMAPNAME">cpl/cpl6/map_rx1_to_tn0.25v3_e1000r300_160721.nc</map>
</gridmap>
<gridmap rof_grid="rx1" ocn_grid="tx1v1" >
<map name="ROF2OCN_LIQ_RMAPNAME">cpl/gridmaps/rx1/map_rx1_to_tx1v1_e1000r300_161214.nc</map>
<map name="ROF2OCN_ICE_RMAPNAME">cpl/gridmaps/rx1/map_rx1_to_tx1v1_e1000r300_161214.nc</map>
Expand Down Expand Up @@ -46,6 +50,10 @@
<map name="ROF2OCN_LIQ_RMAPNAME">cpl/gridmaps/r05/map_r05_to_gx1v7_nn_open_ocean_nnsm_e1000r300_marginal_sea_170413.nc</map>
<map name="ROF2OCN_ICE_RMAPNAME">cpl/gridmaps/r05/map_r05_to_gx1v7_nnsm_e1000r300_170413.nc</map>
</gridmap>
<gridmap rof_grid="r05" ocn_grid="tn0.25v3" >
<map name="ROF2OCN_LIQ_RMAPNAME">cpl/cpl6/map_r05_to_tn0.25v3_e1000r300_160721.nc</map>
<map name="ROF2OCN_ICE_RMAPNAME">cpl/cpl6/map_r05_to_tn0.25v3_e1000r300_160721.nc</map>
</gridmap>
<gridmap rof_grid="r05" ocn_grid="tx1v1" >
<map name="ROF2OCN_LIQ_RMAPNAME">cpl/gridmaps/r05/map_r05_to_tx1v1_e1000r500_161214.nc</map>
<map name="ROF2OCN_ICE_RMAPNAME">cpl/gridmaps/r05/map_r05_to_tx1v1_e1000r500_161214.nc</map>
Expand Down
21 changes: 21 additions & 0 deletions modelgrid_aliases_nuopc.xml
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Expand Up @@ -489,6 +489,13 @@
<mask>gx1v7</mask>
</model_grid>

<model_grid alias="f05_n0253">
<grid name="atm">0.47x0.63</grid>
<grid name="lnd">0.47x0.63</grid>
<grid name="ocnice">tn0.25v3</grid>
<mask>tn0.25v3</mask>
</model_grid>

<model_grid alias="f05_t12">
<grid name="atm">0.47x0.63</grid>
<grid name="lnd">0.47x0.63</grid>
Expand Down Expand Up @@ -831,6 +838,13 @@
<mask>gx1v7</mask>
</model_grid>

<model_grid alias="ne30_n0253">
<grid name="atm">ne30np4</grid>
<grid name="lnd">ne30np4</grid>
<grid name="ocnice">tn0.25v3</grid>
<mask>tn0.25v3</mask>
</model_grid>

<model_grid alias="ne30pg3_g17">
<grid name="atm">ne30np4.pg3</grid>
<grid name="lnd">ne30np4.pg3</grid>
Expand Down Expand Up @@ -905,6 +919,13 @@
<mask>gx1v7</mask>
</model_grid>

<model_grid alias="ne60_n0253">
<grid name="atm">ne60np4</grid>
<grid name="lnd">ne60np4</grid>
<grid name="ocnice">tn0.25v3</grid>
<mask>tn0.25v3</mask>
</model_grid>

<model_grid alias="ne60_ne60_mg16" not_compset="_POP">
<grid name="atm">ne60np4</grid>
<grid name="lnd">ne60np4</grid>
Expand Down