This repository has been archived by the owner on Oct 23, 2023. It is now read-only.
Bump flake8 from 6.0.0 to 6.1.0 #574
Workflow file for this run
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| name: Integration Tests | |
| on: | |
| pull_request: | |
| jobs: | |
| build: | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| runs-on: ${{ matrix.os }} | |
| name: Integration Tests | |
| services: | |
| registry: | |
| image: registry:2 | |
| ports: | |
| - 5000:5000 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install requirements | |
| run: | | |
| pip install aiohttp | |
| pip install requests | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| with: | |
| driver-opts: network=host | |
| - name: Build | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| push: true | |
| file: ./Dockerfile | |
| tags: localhost:5000/beacon-python:latest | |
| cache-from: localhost:5000/beacon-python:latest | |
| cache-to: type=local,dest=/tmp/.buildx-cache | |
| - name: Start Services | |
| run: | | |
| docker-compose -f deploy/test/docker-compose.yml up -d | |
| sleep 10 | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata.json | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata_registered.json | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata_controlled.json | |
| docker exec test_beacon_1 beacon_init /exdata/ALL.chrMT.phase3_callmom-v0_4.20130502.genotypes.vcf.gz /exdata/example_metadata_controlled1.json | |
| - name: Run Integration test | |
| run: | | |
| python deploy/test/run_tests.py | |
| - name: Collect logs from docker | |
| if: ${{ failure() }} | |
| run: cd deploy && docker-compose logs --no-color -t > ../tests/dockerlogs || true | |
| - name: Persist log files | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test_debugging_help | |
| path: tests |