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Fix: Fix OS #20

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Fix: Fix OS

Fix: Fix OS #20

GitHub Actions / JUnit Test Report failed Nov 11, 2024 in 0s

30 tests run, 17 passed, 11 skipped, 2 failed.

Annotations

Check failure on line 22 in tests/test_vacuum_workflow.py

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

test_vacuum_workflow.test_ValidateVacuumSynthesis@group_vacuum 

assert False
 +  where False = <function build at 0x7fb24c6eb880>([ValidateVacuumSynthesis(with_vacuum_morphologies=True, with_morphometrics=True, with_density_profiles=True, with_score_matrix_reports=True, with_trunk_validation=False)], local_scheduler=True)
 +    where <function build at 0x7fb24c6eb880> = luigi.build
Raw output 
vacuum_working_directory = (PosixPath('/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw2/test_ValidateVacuumSynthesis0/out'), PosixPath('/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out'))
data_dir = PosixPath('/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data')

    @pytest.mark.xdist_group("group_vacuum")
    def test_ValidateVacuumSynthesis(vacuum_working_directory, data_dir):
        """Test the synthesis workflow in vacuum."""
        np.random.seed(0)
    
        # Run the workflow
>       assert luigi.build([ValidateVacuumSynthesis()], local_scheduler=True)
E       assert False
E        +  where False = <function build at 0x7fb24c6eb880>([ValidateVacuumSynthesis(with_vacuum_morphologies=True, with_morphometrics=True, with_density_profiles=True, with_score_matrix_reports=True, with_trunk_validation=False)], local_scheduler=True)
E        +    where <function build at 0x7fb24c6eb880> = luigi.build

/home/runner/work/synthesis-workflow/synthesis-workflow/tests/test_vacuum_workflow.py:22: AssertionError

Check failure on line 17 in tests/test_O1_workflow.py

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

test_O1_workflow.test_ValidateSynthesis@group_O1 

assert False
 +  where False = <function build at 0x7f4355dd7880>([ValidateSynthesis(with_collage=True, with_morphometrics=False, with_density_profiles=False, with_path_distance_fits=T...statistics=True, with_morphology_validation_reports=True, with_score_matrix_reports=True, with_trunk_validation=False)], local_scheduler=True)
 +    where <function build at 0x7f4355dd7880> = luigi.build
Raw output 
small_O1_working_directory = (PosixPath('/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/o...h('/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/small_O1'))
data_dir = PosixPath('/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data')

    @pytest.mark.xdist_group("group_O1")
    def test_ValidateSynthesis(small_O1_working_directory, data_dir):
        """Test the synthesis workflow in simple atlas."""
        np.random.seed(0)
    
        # Run the workflow
>       assert luigi.build([ValidateSynthesis()], local_scheduler=True)
E       assert False
E        +  where False = <function build at 0x7f4355dd7880>([ValidateSynthesis(with_collage=True, with_morphometrics=False, with_density_profiles=False, with_path_distance_fits=T...statistics=True, with_morphology_validation_reports=True, with_score_matrix_reports=True, with_trunk_validation=False)], local_scheduler=True)
E        +    where <function build at 0x7f4355dd7880> = luigi.build

/home/runner/work/synthesis-workflow/synthesis-workflow/tests/test_O1_workflow.py:17: AssertionError
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