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Add 2023 pubandtrain #810

Merged
merged 12 commits into from
Sep 17, 2024
75 changes: 66 additions & 9 deletions _data/presentations.csv

Large diffs are not rendered by default.

54 changes: 33 additions & 21 deletions _includes/presentations.html
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@@ -1,25 +1,37 @@
{% assign presentations = site.data.presentations %}
{% for presentation in site.data.presentations reversed %}
<li>
{% if presentation.EventBSLink %}
{% assign event-id = "/meetings/" | append: {{presentation.EventBSLink}} %}
{% assign event = site.meetings | where:"id", event-id | first %}
<a href="{{event-id}}">{{event.name}}</a>, {{event.dates}}
{% else %}
{% if presentation.EventURL %}
<a href="{{presentation.EventURL}}">{{presentation.EventName}}</a>
{% assign presentations_by_year = site.data.presentations | sort: "EventYear" %}
<ul>
{% for presentation in presentations_by_year reversed %}
<li> [{{presentation.EventYear}}]

{% if presentation.EventBSLink %}
<!-- Bioschemas URL for the event -->
{% assign event-id = "/meetings/" | append: {{presentation.EventBSLink}} %}
{% assign event = site.meetings | where:"id", event-id | first %}
<a href="{{event-id}}">{{event.name}}</a>, {{event.dates}}
{% else %}
{{presentation.EventName}}, {{presentation.EventDate}}
<!-- URL for the event -->
{% if presentation.EventURL %}
<a href="{{presentation.EventURL}}">{{presentation.EventName}}</a>
{% else %}
{{presentation.EventName}}, {{presentation.EventDate}}
{% endif %}
{% endif %}
<!-- <ul><li> -->
<!-- if multiple authors -->
{% if presentation.Presenter contains ' ' %}
{{presentation.Presenter}}.
{% else %}
{% assign author-id = "/people/" | append: presentation.Presenter %}
{% assign author = site.people | where:"id", author-id | first %}
<a href="{{author-id}}">{{author.first-name}} {{author.last-name}}</a>.
{% endif %}
{% endif %}
<ul><li>
{% assign author-id = "/people/" | append: presentation.Presenter %}
{% assign author = site.people | where:"id", author-id | first %}
<a href="{{author-id}}">{{author.first-name}} {{author.last-name}}</a>.
{{presentation.first[1]}}
(<a href="{{presentation.Slides}}">Slides</a>)
</li></ul>
</li>
{% endfor %}
{% if presentation.Slides %}
(<a href="{{presentation.Slides}}">Slides or paper</a>)
{% endif %}
<!-- </li></ul> -->
</li>
{% endfor %}
</ul>

{{presentation.first | remove_first: "Title"}}
{{presentation.first | remove_first: "Title"}}
157 changes: 92 additions & 65 deletions pages/_about/publications.html

Large diffs are not rendered by default.

17 changes: 17 additions & 0 deletions pages/_meetings/2023-06_ELIXIRAllHands2023.md
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---
layout: meeting
name: Building lightweight FAIR data packages with Bioschemas and RO-Crate at ELIXIR All Hands 2023
title: ELIXIR All Hands 2023
dates: 06 to 08 June 2023
start_date: 2023-06-06
end_date: 2023-06-08
venue:
meeting-url: https://elixir-europe.org/events/elixir-all-hands-2023
tbc: false
contact-people:
- StianSoiland-Reyes
- LeylaGarcia
---

Bioschemas and RO-Crate to create FAIR data packages and a use case to build metadata models for synthetic data at [ELIXIR All Hands 2023](https://elixir-europe.org/events/elixir-all-hands-2023).

16 changes: 16 additions & 0 deletions pages/_meetings/2023-07_OSFCologne2023.md
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---
layout: meeting
name: Data exchange with RO-Crates and Knowledge Graphs at Open Science Festival Cologne 2023
title: Data exchange with RO-Crates and Knowledge Graphs
dates: 05 and 06 July 2023
start_date: 2023-07-05
end_date: 2023-07-06
venue: ZB MED, Cologne, Germany
meeting-url: https://www.zbmed.de/vernetzen/veranstaltungen/open-science-festival
tbc: false
contact-people:
- StianSoiland-Reyes
- LeylaGarcia
---

Bioschemas, RO-Crate and Knowledge Graphs tutorial and discussion at the [Open Science Festival Cologne 2023](https://www.zbmed.de/vernetzen/veranstaltungen/open-science-festival).
26 changes: 26 additions & 0 deletions pages/_meetings/2023-10_BHEU2023.md
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---
layout: meeting
name: Bioschemas at BioHackathon Europe 2023
title: BioHackathon Europe 2023
dates: 30 October to 03 November 2023
start_date: 2023-10-30
end_date: 2023-11-03
venue: Barcelona, Spain
meeting-url: https://biohackathon-europe.org/
tbc: false
contact-people:
- LeylaGarcia
- AlbanGaignard
- NickJuty
- GingerTsueng
- StianSoiland-Reyes
- IvanMicetic
- SteffenNeumann

---

There will be some Bioschemas-related projects at the [BioHackathon Europe 2023](https://biohackathon-europe.org/)

- [Bioschemas resource index for chem and plants](https://github.com/elixir-europe/biohackathon-projects-2023/tree/main/7)
- [Enabling FAIR Digital Objects with RO-Crates, Signposting and Bioschemas](https://github.com/elixir-europe/biohackathon-projects-2023/tree/main/15)
- [Improving Bioschemas creation and community adoption through process improvements and tool development, and advancing compliance to FAIR standards](https://github.com/elixir-europe/biohackathon-projects-2023/tree/main/23)
20 changes: 20 additions & 0 deletions pages/_meetings/2023-12_BHDE2023.md
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---
layout: meeting
name: Bioschemas at BioHackathon Germany 2023
title: BioHackathon Germany 2023
dates: 11-15 December 2023
start_date: 2023-12-11
end_date: 2023-12-15
venue: Bielefeld, Germany
meeting-url: https://www.denbi.de/de-nbi-events/1547-biohackathon-germany-2
tbc: false
contact-people:
- AlbanGaignard
- NickJuty
---

Nick Juty and Alban Gaignard will be co-leading the project [Improving Bioschemas tooling and community support](https://www.denbi.de/de-nbi-events/1618-improving-bioschemas-tooling-and-community-support) during the [BioHackathon Germany 2023](https://www.denbi.de/de-nbi-events/1547-biohackathon-germany-2).

Other projects using Bioschemas:
* [Ontologies and Terminology services ecosystem in life sciences and beyond](https://www.denbi.de/de-nbi-events/1604-ontologies-and-terminology-services-ecosystem-in-life-sciences-and-beyond) co-lead by Steffen Neumann (IPB Halle) & Oliver Koepler (TIB Hannover)
* [Increasing FAIRness in agrosystem sciences and plant phenomics](https://www.denbi.de/de-nbi-events/1619-increasing-fairness-in-agrosystem-sciences-and-plant-phenomics) co-lead by Gabriel Schneider (ZB MED), Patrick König (IPK Gatersleben) & Cyril Pommier (ELIXIR-FR)
16 changes: 16 additions & 0 deletions pages/_meetings/2024-02_SWAT4HCLS2024.md
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---
layout: meeting
name: Bioschemas at SWAT4HCLS 2024
title: SWAT4HCLS 2024
dates: 26-29 February 2024
start_date: 2024-02-26
end_date: 2024-02-29
venue: Leiden, the Netherlands
meeting-url: https://www.swat4ls.org/
tbc: false
contact-people:
- LeylaGarcia
- StianSoiland-Reyes
---

There will be a Bioschemas, RO-crate and Signposting tutorial at [SWAT4HCLS 2024](https://www.swat4ls.org/) about ["Improving FAIRability of your research outcomes with RO-Crates, Signposting and Bioschemas"](https://drive.google.com/file/d/1zH7OfaIQmoy-R9Ajl-oyM4pEQxWYw5WW/view?usp=drive_link)
1 change: 0 additions & 1 deletion pages/_news/2023-06-24-BioHackathon-Europe-2023.md
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---
layout: post
title: "Projects Accepted at BioHackathon-Europe 2023"
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19 changes: 19 additions & 0 deletions pages/_news/2024-01-26-BHEUPreprint.md
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---
layout: post
title: "BioHackEU23 report: Enabling FAIR Digital Objects with RO-Crate, Signposting and Bioschemas"
tags:
- RO-crate
- Signposting
- FDO
- BHEU2023
- Preprint
- BioHackrXiv
---

We are pleased to announce the first [BioHackrXiv](https://biohackrxiv.org) preprint of 2024. It reports on the work done during the past [BioHackathon Europe 2023](https://biohackathon-europe.org/) by the group [Enabling FAIR Digital Objects with RO-Crates, Signposting and Bioschemas](https://github.com/elixir-europe/biohackathon-projects-2023/tree/main/15).

Citation and link:

Soiland-Reyes S, Castro LJ, Ravinder R, Weiland C, Grieb J, Rogers A, et al. BioHackEU23 report: Enabling FAIR Digital Objects with RO-Crate, Signposting and Bioschemas. BioHackrXiv (OSF server); 2024. DOI:10.37044/osf.io/gmk2h. Available: [https://osf.io/gmk2h](https://osf.io/gmk2h)


20 changes: 20 additions & 0 deletions pages/_news/2024-01-30-BHEUPreprintChemPlant.md
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---
layout: post
title: "Bioschemas Resource Index for Chem and Plants"
tags:
- NFDI
- FAIRAgro
- NFDI4Biodiversity
- BHEU2023
- Preprint
- BioHackrXiv
---

We are pleased to announce the second [BioHackrXiv](https://biohackrxiv.org) preprint of 2024. It reports on the work done during the past [BioHackathon Europe 2023](https://biohackathon-europe.org/) by the group [Bioschemas resource index for chem and plants](https://github.com/elixir-europe/biohackathon-projects-2023/tree/main/7).


Citation and link:

Arend D, Conte AD, Feser M, Gadiya Y, Gaignard A, Castro LJ, et al. Bioschemas Resource Index for Chem and Plants. OSF; 2024. doi:10.37044/osf.io/yxunp. Available: [https://osf.io/yxunp](https://osf.io/yxunp)


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