tests: add tests with github actions

.github/workflows/tests.yaml

@@ -0,0 +1,44 @@
+name: tests
+
+on:
+ push:
+ paths-ignore:
+ - "README.md"
+ - "docs/**"
+ - "CHANGELOG.md"
+
+ pull_request:
+ paths-ignore:
+ - "README.md"
+ - "docs/*"
+ - "CHANGELOG.md"
+
+jobs:
+ build_cpu:
+ runs-on: ubuntu-latest
+ # https://github.com/marketplace/actions/setup-miniconda#use-a-default-shell
+ defaults:
+ run:
+ shell: bash -l {0}
+
+ strategy:
+ matrix:
+ python-version: [3.7, 3.8, 3.9, "3.10", 3.11]
+ steps:
+ - name: Checkout repository
+ uses: actions/checkout@v3
+ # See: https://github.com/marketplace/actions/setup-miniconda
+ - name: Setup miniconda
+ uses: conda-incubator/setup-miniconda@v2
+ with:
+ auto-update-conda: true
+ miniforge-variant: Mambaforge
+ conda-channels: conda-forge
+ python-version: ${{ matrix.python-version }}
+ use-mamba: true
+ - name: Install BioPandas
+ run: pip install -e .
+ - name: Install Dev Dependencies
+ run: pip install mmtf-python numpy scipy pandas pytest looseversion importlib_resources
+ - name: Run unit tests and generate coverage report
+ run: pytest -s -