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New test script and fixing of MacOSX problems #4
Commits on May 12, 2016
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Added testing under osx and linux to travis.yml
I am using the new feature to test under different operation systems. Therefore, we should be able to guarantee that the SeqChunker works under Linux and MacOSX
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According to https://docs.travis-ci.com/user/customizing-the-build/#Customizing-the-Installation-Step the installation step to resolve dependencies can be avoided. In our project that makes sense due to we have no real perl program running
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Ignoring build failures under osx
Due to we are sure about the MacOSX version, I tollerate build failures under osx
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Added a bash function to avoid redundancy
I added a litte bash function to avoid redundancy during testing
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Removed first to fasta checks due to they are already performed using…
… the test_fasta function
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Renamed test function to test_SeqChunker, corrected the test-names, a…
…nd moved input file definition down to tests
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Added TAP directive support and enable TODO directive for SeqChunker-…
…sed, due to it seems to be broken
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Each test generates individual set of output files
Changed the way, the combined output will be generated. So each test will generate its own set of output files. The name of the output files are generated according to: tmp.TESTNUMBER.* So the tests if the correct output was generated can now avoid diff, but use the md5sum of the output instead.
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Commits on May 13, 2016
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Changed to prove harnest to run tests
This is expected to fail for the original test script, but should work on the new one
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Added missing md5 reference sums
To generate the sums based on the original one, I used the following perl statement: ``` perl -ne ' unless (/tmp/) { print; next } print; foreach my $fact (map {$_*14} (1..3)) { $bla=$_; $bla=~s/(?<=\.)(\d+)(?=\.)/$1+$fact/eg; print $bla; } ' reference.md5 ```
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Commits on May 14, 2016
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Merge pull request #8 from BioInf-Wuerzburg/feature/travis-ci-testing
Testing at Travis-CI is now available
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