nimble-aligner should be installed and used via its Python cli package.
nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data. nimble-aligner uses pseudoalignment in order to rapidly generate supplemental calls via rust-pseudoaligner.
This project uses Rust-Bio: Köster, J. (2016). Rust-Bio: a fast and safe bioinformatics library. Bioinformatics, 32(3), 444-446.