Skip to content

fixed sheet nr

fixed sheet nr #6

Workflow file for this run

name: build-github-pages
env:
GITHUB_ACTOR: BackofenLab
GITHUB_REPOSITORY: BackofenLab/V_RNA-pages
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
on:
push:
branches:
- main
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
contents: write
pages: write
id-token: write
jobs:
build_rmarkdown_job:
runs-on: ubuntu-latest
steps:
- name: Get prerequisites and clone repository
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
set -x
sudo apt-get update
sudo apt-get install -y git
git clone "https://token:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git" .
shell: bash
- name: create environment with mamba
uses: conda-incubator/setup-miniconda@v2
with:
mamba-version: "*"
channels: conda-forge,defaults
auto-activate-base: false
activate-environment: rmarkdown-env
environment-file: .github/envs/environment.yml
- name: Render Rmd files
run: |
eval "$(conda shell.bash hook)"
conda activate rmarkdown-env
Rscript -e "rmarkdown::render_site()"
- name: Upload artifact
uses: actions/upload-pages-artifact@v2
with:
# Upload entire repository
path: 'docs/'
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v2