Skip to content

Issues: BIMSBbioinfo/pigx_sars-cov-2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 70 Closed
22 Open 70 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Consider adapting long formats for output files
#159 opened Feb 24, 2023 by alexg9010
Step away from modifying column names
#158 opened Feb 24, 2023 by alexg9010
Better deconvolution error reporting type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#157 opened Feb 23, 2023 by jonasfreimuth
No version referenced in the reports prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#151 opened Oct 25, 2022 by jonasfreimuth
Rule create_overviewQC_table takes needlessly long prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#134 opened Aug 13, 2022 by jonasfreimuth
include databases in release? prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#102 opened Mar 4, 2022 by alexg9010
2 tasks
2
ivar_primer_trim rule: calculate 80% of length for trimming prio:High Most urgent issues get this tag type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#99 opened Feb 8, 2022 by rcuadrat
2
Outputs from only *.vcf file type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#95 opened Dec 29, 2021 by sinclairify
@vicfabienne
7
mutation_sheet: Write script to write a mutation sheet automatically from covidCG lists good first issue Good for newcomers prio:Low issues needs to be fixed in long term type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#94 opened Sep 2, 2021 by vicfabienne
2
Adding num of Sars-Cov-2 hits to taxonomy report type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#92 opened Aug 18, 2021 by mirifax
reports: get descriptive parameters from settings-file prio:Low issues needs to be fixed in long term question Further information is requested type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#83 opened Jun 23, 2021 by vicfabienne
2
needed: Stack plot giving overview over all samples despite location prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#82 opened Jun 22, 2021 by vicfabienne
1
add location labels zu discs on map plot prio:Low issues needs to be fixed in long term type:aesthetics enhance the looks type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#76 opened Jun 9, 2021 by vicfabienne
Ideas for various convenience scripts type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#68 opened Jun 5, 2021 by vicfabienne
1 of 2 tasks
3
Write tests and create more robust and maintainable architecture prio:Med Issues that needs to be fixed in a month
#67 opened Jun 5, 2021 by vicfabienne
2
Misc points about all reports prio:Med Issues that needs to be fixed in a month type:aesthetics enhance the looks
#65 opened Jun 4, 2021 by vicfabienne
3 of 5 tasks
3
remove whitespace type:aesthetics enhance the looks
#64 opened Jun 4, 2021 by vicfabienne
Misc points about the qc reports prio:Med Issues that needs to be fixed in a month question Further information is requested
#63 opened Jun 4, 2021 by vicfabienne
2 of 3 tasks
@vicfabienne
2
Allow optional specification of cut off factor per sample prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#53 opened Jun 4, 2021 by rekado
Compute read length automatically prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#52 opened Jun 4, 2021 by rekado
documentation refinement suggestions question Further information is requested type:documentation Improvements or additions to documentation
#51 opened Jun 4, 2021 by vicfabienne
17 of 30 tasks
1
How to improve navigation through the reports brainstorming Issues under discussion and that doesn't have a clear to do prio:Med Issues that needs to be fixed in a month type:enhancement any enhancement that doesn't fit into aesthetics, bug or documentation
#33 opened May 27, 2021 by mirifax
3 tasks
@rekado
8
ProTip! Updated in the last three days: updated:>2024-10-18.