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Disregard mitochondrial and rna-gene fusions #237

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arkal opened this issue Oct 16, 2017 · 0 comments · May be fixed by #288
Open

Disregard mitochondrial and rna-gene fusions #237

arkal opened this issue Oct 16, 2017 · 0 comments · May be fixed by #288
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arkal commented Oct 16, 2017

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@arkal arkal changed the title Disregard mitochondrial fusions Disregard mitochondrial and rna-gene fusions Oct 16, 2017
@arkal arkal mentioned this issue Oct 17, 2017
Closed
arkal added a commit to arkal/Transgene that referenced this issue Oct 23, 2017
@arkal
Filter fusion artifacts (resolves #29)
c37c8c5 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
arkal added a commit to arkal/Transgene that referenced this issue Oct 24, 2017
@arkal
Filter fusion artifacts (resolves #29)
933d5f0 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
arkal added a commit to arkal/Transgene that referenced this issue Oct 24, 2017
@arkal
Filter fusion artifacts (resolves #29)
845577d 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
arkal added a commit to arkal/Transgene that referenced this issue Dec 6, 2017
@arkal
Filter fusion artifacts (resolves #29)
fd2f299 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
@arkal arkal mentioned this issue Dec 6, 2017
Merged
arkal added a commit that referenced this issue May 16, 2018
@arkal
Add fusion filters for transgene (resolves #237)
7d52205 
Added all fusion parameters to the input config so users can control
what fusion filters are applied.
arkal added a commit that referenced this issue May 17, 2018
@arkal
Add fusion filters for transgene (resolves #237)
f92e489 
resolves #237

Added all fusion parameters to the input config so users can control
what fusion filters are applied.
arkal added a commit that referenced this issue May 17, 2018
@arkal
Add fusion filters for transgene (resolves #237)
4a36315 
resolves #237

Added all fusion parameters to the input config so users can control
what fusion filters are applied.
@arkal arkal linked a pull request May 17, 2018 that will close this issue
Open
@ghost ghost assigned arkal May 17, 2018
@ghost ghost added the in progress label May 17, 2018
arkal added a commit that referenced this issue May 18, 2018
@arkal
Add fusion filters for transgene (resolves #237)
498c612 
resolves #237

Added all fusion parameters to the input config so users can control
what fusion filters are applied.
arkal added a commit that referenced this issue May 18, 2018
@arkal
Add fusion filters for transgene (resolves #237)
b87faa6 
resolves #237

Added all fusion parameters to the input config so users can control
what fusion filters are applied.
arkal added a commit that referenced this issue May 19, 2018
@arkal
Add fusion filters for transgene (resolves #237)
caa408f 
resolves #237

Added all fusion parameters to the input config so users can control
what fusion filters are applied.
arkal added a commit that referenced this issue May 19, 2018
@arkal
Add fusion filters for transgene (resolves #237)
b265b68 
resolves #237

Added all fusion parameters to the input config so users can control
what fusion filters are applied.
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Add fusion filters for transgene (resolves #237) BD2KGenomics/protect
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