Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Filter fusion artefacts #29

Closed
arkal opened this issue Oct 17, 2017 · 0 comments · Fixed by #35
Closed

Filter fusion artefacts #29

arkal opened this issue Oct 17, 2017 · 0 comments · Fixed by #35

Comments

@arkal
Copy link
Owner

arkal commented Oct 17, 2017

related to BD2KGenomics/protect#237
arkal added a commit that referenced this issue Oct 23, 2017
@arkal
Filter fusion artifacts (resolves #29)
c37c8c5 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
arkal added a commit that referenced this issue Oct 24, 2017
@arkal
Filter fusion artifacts (resolves #29)
933d5f0 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
arkal added a commit that referenced this issue Oct 24, 2017
@arkal
Filter fusion artifacts (resolves #29)
845577d 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
arkal added a commit that referenced this issue Dec 6, 2017
@arkal
Filter fusion artifacts (resolves #29)
fd2f299 
resolves #29
related to BD2KGenomics/protect#237

Fusion calling often has FPS related to homology, especially among
mitochondrial  and (lnc,etc) RNA genes. Furthermore, transcriptional
readthroughs are usually oncologically irrelevant. This PR adds
filtering flags for mitochondrial, Immunoglobulin, RP11- (lncRNA) and
transcriptional readthrough filtering.
@arkal arkal mentioned this issue Dec 6, 2017
Merged
@arkal arkal closed this as completed in #35 Dec 6, 2017
arkal added a commit that referenced this issue Dec 6, 2017
@arkal
Merge pull request #35 from /issues/29-filter-fusion-artefacts
04fb8fc 
Filter fusion artifacts (resolves #29)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Filter fusion artifacts (resolves #29) arkal/Transgene
1 participant
@arkal