Fixes

racs_tools/beamcon_2D.py

@@ -483,7 +483,7 @@ def smooth_fits_files(
  if listfile:
  assert len(infile_list) == 1, "Only one list file can be provided!"
  with open(infile_list[0]) as f:
- infile_list = [Path(l) for l in f.read().splitlines()]
+ infile_list = [Path(line) for line in f.read().splitlines()]
  files = sorted(infile_list)
  if len(files) == 0:
  raise FileNotFoundError("No files found!")

racs_tools/getnoise_list.py

@@ -11,7 +11,7 @@
 from spectral_cube import SpectralCube
 from spectral_cube.utils import SpectralCubeWarning
 
-from racs_tools.logging import logger, setup_logger
+from racs_tools.logging import logger, set_verbosity
 
 warnings.filterwarnings(action="ignore", category=SpectralCubeWarning, append=True)
 
@@ -30,7 +30,7 @@ def getcube(filename: str) -> SpectralCube:
  SpectralCube: Data cube
  """
  cube = SpectralCube.read(filename)
- mask = ~(cube == 0 * u.jansky / u.beam)
+ mask = ~(cube == 0 * cube.unit)
  cube = cube.with_mask(mask)
  return cube
 
@@ -189,7 +189,7 @@ def main(
 
  if outfile:
  logger.info(f"Saving bad files to {outfile}")
- np.savetxt(outfile, totalbad)
+ np.savetxt(outfile, totalbad.astype(int), fmt="%d")
 
 
 def cli() -> None:
@@ -256,9 +256,9 @@ def cli() -> None:
  args = parser.parse_args()
 
  # Set up logging
- logger = setup_logger(
+ set_verbosity(
+ logger=logger,
  verbosity=args.verbosity,
- filename=args.logfile,
  )
 
  main(