Merge pull request #60 from Sunmish/textfile-input

allow input listfile to avoid sh limits on max number of arguments on the command line

racs_tools/beamcon_2D.py

@@ -489,6 +489,7 @@ def main(
  tolerance: float = 0.0001,
  nsamps: int = 200,
  epsilon: float = 0.0005,
+ listfile: bool = False,
 ):
  """Main script.
 
@@ -525,6 +526,9 @@ def main(
  outdir = os.path.abspath(outdir)
 
  # Get file list
+ if listfile:
+ with open(infile[0]) as f:
+ infile = f.read().splitlines()
  files = sorted(infile)
  if files == []:
  raise Exception("No files found!")
@@ -664,6 +668,12 @@ def cli():
  nargs="+",
  )
 
+ parser.add_argument(
+ "--listfile",
+ action="store_true",
+ help="Switch to assume `infile` is a text file list of images.",
+ )
+
  parser.add_argument(
  "-p",
  "--prefix",