IC-Auto

Automated analysis of behavioral sequences in IntelliCage

IntelliCage is a modern system for conducting automated and long-term behavioral test on behaving rodents.
A processing pipeline of Python packages was utilized to analyze behavioral data obtained in Intellicage.
This allows for identification of novel behavioral sequences that were not apparent in manual analysis.

Dependencies

The following packages are required for using the analysis scripts:

IntelliCage archives for running the code are available upon reasonable request.

Esmaeili, A., Antonova, A., Sitnikova, E., & Smirnov, K. (2021). Whisker trimming during infanthood modifies the development of spike-wave discharges and behavioral sequences in IntelliCage impulsivity paradigm in adult WAG/Rij rats. Behavioural brain research, 113627. Advance online publication. https://doi.org/10.1016/j.bbr.2021.113627

Name		Name	Last commit message	Last commit date
Latest commit History 34 Commits
README.md		README.md
VA.svg		VA.svg
aggAnalyze.py		aggAnalyze.py
aggExport.py		aggExport.py
aggPlot.py		aggPlot.py
aggStats.py		aggStats.py
analysisIC.py		analysisIC.py
genTimeline.py		genTimeline.py
main.py		main.py