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environment.yml
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environment.yml
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name: base
channels:
- conda-forge
- r
- anaconda
- default
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- argcomplete=2.0.0=pyhd8ed1ab_0
- attrs=22.1.0=pyh71513ae_1
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_10
- bioconductor-annotate=1.76.0=r42hdfd78af_0
- bioconductor-annotationdbi=1.60.0=r42hdfd78af_0
- bioconductor-biobase=2.58.0=r42hc0cfd56_0
- bioconductor-biocgenerics=0.44.0=r42hdfd78af_0
- bioconductor-biocparallel=1.32.0=r42hc247a5b_0
- bioconductor-biostrings=2.66.0=r42hc0cfd56_0
- bioconductor-data-packages=20221112=hdfd78af_0
- bioconductor-delayedarray=0.24.0=r42hc0cfd56_0
- bioconductor-deseq2=1.38.0=r42hc247a5b_0
- bioconductor-genefilter=1.80.0=r42h38f54d8_0
- bioconductor-geneplotter=1.76.0=r42hdfd78af_0
- bioconductor-genomeinfodb=1.34.1=r42hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.9=r42hdfd78af_0
- bioconductor-genomicranges=1.50.0=r42hc0cfd56_0
- bioconductor-iranges=2.32.0=r42hc0cfd56_0
- bioconductor-keggrest=1.38.0=r42hdfd78af_0
- bioconductor-matrixgenerics=1.10.0=r42hdfd78af_0
- bioconductor-s4vectors=0.36.0=r42hc0cfd56_0
- bioconductor-summarizedexperiment=1.28.0=r42hdfd78af_0
- bioconductor-xvector=0.38.0=r42hc0cfd56_0
- bioconductor-zlibbioc=1.44.0=r42hc0cfd56_0
- biopython=1.80=py39hb9d737c_0
- blas=1.1=openblas
- brotlipy=0.7.0=py39h27cfd23_1003
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- cairo=1.16.0=h18b612c_1001
- certifi=2022.9.24=pyhd8ed1ab_0
- cffi=1.15.0=py39hd667e15_1
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- codecov=2.1.12=pyhd8ed1ab_0
- colorama=0.4.4=pyhd3eb1b0_0
- conda=4.12.0=py39h06a4308_0
- conda-content-trust=0.1.1=pyhd3eb1b0_0
- conda-package-handling=1.8.1=py39h7f8727e_0
- coverage=6.5.0=py39hb9d737c_1
- cryptography=36.0.0=py39h9ce1e76_0
- curl=7.86.0=h2283fc2_1
- exceptiongroup=1.0.4=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=11.2.0=h82a94d6_16
- gcc_linux-64=11.2.0=h39a9532_10
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=11.2.0=h7a446d4_16
- gfortran_linux-64=11.2.0=h777b47f_10
- glib=2.74.1=h6239696_0
- glib-tools=2.74.1=h6239696_0
- graphite2=1.3.14=h295c915_1
- gxx_impl_linux-64=11.2.0=h82a94d6_16
- gxx_linux-64=11.2.0=hacbe6df_10
- harfbuzz=4.3.0=hd55b92a_0
- icu=58.2=hf484d3e_1000
- idna=3.3=pyhd3eb1b0_0
- importlib-metadata=4.11.4=py39hf3d152e_0
- importlib_metadata=4.11.4=hd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jpeg=9e=h166bdaf_2
- jq=1.6=h36c2ea0_1000
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.19.3=h08a2579_0
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=4.0.0=h27087fc_0
- libarchive=3.5.2=hada088e_3
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.86.0=h2283fc2_1
- libdeflate=1.14=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=11.2.0=h0952999_16
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h7a41b64_0
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libmamba=1.0.0=h9eff5f0_2
- libmambapy=1.0.0=py39h37259de_2
- libnghttp2=1.47.0=hff17c54_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libsanitizer=11.2.0=he4da1e4_16
- libsolv=0.7.22=h6239696_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-devel_linux-64=11.2.0=h0952999_16
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h55922b4_4
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.14=h74e7548_0
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.3=h9c3ff4c_1
- lzo=2.10=h516909a_1000
- make=4.3=hd18ef5c_1
- mamba=1.0.0=py39hc5d2bb1_2
- markupsafe=2.1.1=py39hb9d737c_2
- ncurses=6.3=h7f8727e_2
- numpy=1.23.5=py39h3d75532_0
- oniguruma=6.9.8=h166bdaf_0
- openblas=0.3.21=pthreads_h320a7e8_3
- openjpeg=2.5.0=h7d73246_1
- openssl=3.0.7=h166bdaf_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.5.2=py39h4661b88_0
- pango=1.50.7=hbd2fdc8_0
- pcre2=10.37=hc3806b6_1
- pillow=9.2.0=py39hf3a2cdf_3
- pip=21.2.4=py39h06a4308_0
- pixman=0.38.0=h516909a_1003
- pluggy=1.0.0=py39hf3d152e_4
- pthread-stubs=0.4=h36c2ea0_1001
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.3=py39h27cfd23_0
- pycparser=2.21=pyhd3eb1b0_0
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysocks=1.7.1=py39h06a4308_0
- pytest=7.2.0=py39hf3d152e_1
- pytest-cov=4.0.0=pyhd8ed1ab_0
- python=3.9.15=hba424b6_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2022.6=pyhd8ed1ab_0
- python_abi=3.9=2_cp39
- pytz=2022.6=pyhd8ed1ab_0
- pytz-deprecation-shim=0.1.0.post0=py39hf3d152e_3
- pyyaml=6.0=py39hb9d737c_5
- r-askpass=1.1=r42h06615bd_3
- r-backports=1.4.1=r42h06615bd_1
- r-base=4.2.0=h1ae530e_0
- r-bh=1.78.0_0=r42hc72bb7e_1
- r-bit=4.0.5=r42h06615bd_0
- r-bit64=4.0.5=r42h06615bd_1
- r-bitops=1.0_7=r42h06615bd_1
- r-blob=1.2.3=r42hc72bb7e_1
- r-brio=1.1.3=r42h06615bd_1
- r-cachem=1.0.6=r42h06615bd_1
- r-callr=3.7.3=r42hc72bb7e_0
- r-cli=3.4.1=r42h7525677_1
- r-codetools=0.2_18=r42hc72bb7e_1
- r-colorspace=2.0_3=r42h06615bd_1
- r-cpp11=0.4.3=r42hc72bb7e_0
- r-crayon=1.5.2=r42hc72bb7e_1
- r-curl=4.3.3=r42h06615bd_1
- r-dbi=1.1.3=r42hc72bb7e_1
- r-desc=1.4.2=r42hc72bb7e_1
- r-diffobj=0.3.5=r42h06615bd_1
- r-digest=0.6.30=r42h7525677_0
- r-ellipsis=0.3.2=r42h06615bd_1
- r-evaluate=0.18=r42hc72bb7e_0
- r-fansi=1.0.3=r42h06615bd_1
- r-farver=2.1.1=r42h7525677_1
- r-fastmap=1.1.0=r42h7525677_1
- r-formatr=1.12=r42hc72bb7e_1
- r-fs=1.5.2=r42h7525677_2
- r-futile.logger=1.4.3=r42hc72bb7e_1004
- r-futile.options=1.0.1=r42hc72bb7e_1003
- r-ggplot2=3.4.0=r42hc72bb7e_0
- r-glue=1.6.2=r42h06615bd_1
- r-gtable=0.3.1=r42hc72bb7e_1
- r-httr=1.4.4=r42hc72bb7e_1
- r-isoband=0.2.6=r42h7525677_1
- r-jsonlite=1.8.3=r42h06615bd_0
- r-labeling=0.4.2=r42hc72bb7e_2
- r-lambda.r=1.2.4=r42hc72bb7e_2
- r-lattice=0.20_45=r42h06615bd_1
- r-lifecycle=1.0.3=r42hc72bb7e_1
- r-locfit=1.5_9.6=r42h06615bd_1
- r-magrittr=2.0.3=r42h06615bd_1
- r-mass=7.3_58.1=r42h06615bd_1
- r-matrix=1.5_3=r42h5f7b363_0
- r-matrixstats=0.63.0=r42h06615bd_0
- r-memoise=2.0.1=r42hc72bb7e_1
- r-mgcv=1.8_41=r42h5f7b363_0
- r-mime=0.12=r42h06615bd_1
- r-munsell=0.5.0=r42hc72bb7e_1005
- r-nlme=3.1_160=r42h8da6f51_0
- r-openssl=2.0.4=r42h1f3e0c5_0
- r-pillar=1.8.1=r42hc72bb7e_1
- r-pkgconfig=2.0.3=r42hc72bb7e_2
- r-pkgload=1.3.2=r42hc72bb7e_0
- r-plogr=0.2.0=r42hc72bb7e_1004
- r-png=0.1_7=r42h06615bd_1006
- r-praise=1.0.0=r42hc72bb7e_1006
- r-processx=3.8.0=r42h06615bd_0
- r-ps=1.7.2=r42h06615bd_0
- r-r6=2.5.1=r42hc72bb7e_1
- r-rcolorbrewer=1.1_3=r42h785f33e_1
- r-rcpp=1.0.9=r42h7525677_2
- r-rcpparmadillo=0.11.4.2.1=r42h9f5de39_0
- r-rcurl=1.98_1.9=r42h06615bd_1
- r-rematch2=2.1.2=r42hc72bb7e_2
- r-rlang=1.0.6=r42h7525677_1
- r-rprojroot=2.0.3=r42hc72bb7e_1
- r-rsqlite=2.2.19=r42h7525677_0
- r-scales=1.2.1=r42hc72bb7e_1
- r-snow=0.4_4=r42hc72bb7e_1
- r-survival=3.4_0=r42h06615bd_1
- r-sys=3.4.1=r42h06615bd_0
- r-testthat=3.1.5=r42h7525677_1
- r-tibble=3.1.8=r42h06615bd_1
- r-utf8=1.2.2=r42h06615bd_1
- r-vctrs=0.5.1=r42h7525677_0
- r-viridislite=0.4.1=r42hc72bb7e_1
- r-waldo=0.4.0=r42hc72bb7e_1
- r-withr=2.5.0=r42hc72bb7e_1
- r-xml=3.99_0.11=r42h2b86b34_2
- r-xtable=1.8_4=r42hc72bb7e_4
- readline=8.1.2=h7f8727e_1
- reportlab=3.5.68=py39he59360d_1
- reproc=14.2.3=h7f98852_0
- reproc-cpp=14.2.3=h9c3ff4c_0
- requests=2.27.1=pyhd3eb1b0_0
- rpy2=3.5.6=py39r42h2ae25f5_0
- ruamel_yaml=0.15.100=py39h27cfd23_0
- setuptools=61.2.0=py39h06a4308_0
- simplegeneric=0.8.1=py_1
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.38.2=hc218d9a_0
- sysroot_linux-64=2.12=he073ed8_15
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tqdm=4.63.0=pyhd3eb1b0_0
- tzdata=2022a=hda174b7_0
- tzlocal=4.2=py39hf3d152e_2
- urllib3=1.26.8=pyhd3eb1b0_0
- wheel=0.37.1=pyhd3eb1b0_0
- xmltodict=0.13.0=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7b6447c_0
- yaml-cpp=0.7.0=h27087fc_2
- yq=2.13.0=pyhd8ed1ab_0
- zipp=3.11.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=ha4553b6_0
- pip:
- diffexp==0.1
prefix: /opt/conda