diff --git a/build_manifest.csv b/build_manifest.csv index b95e83e..6afb090 100644 --- a/build_manifest.csv +++ b/build_manifest.csv @@ -28,4 +28,4 @@ fastani,1.34 dbutils,0.1.4 sratools,3.0.10 art,2016.06.05 -crispropendb,0.0.1 +crispropendb,0.0.2 diff --git a/crispropendb/Dockerfile b/crispropendb/Dockerfile index 5313eb5..925d032 100644 --- a/crispropendb/Dockerfile +++ b/crispropendb/Dockerfile @@ -1,12 +1,12 @@ FROM mambaorg/micromamba:0.25.1 ARG VERSION="1.1.0" -RUN micromamba install -y -n base -c conda-forge -c bioconda -c defaults wget unzip bc +RUN micromamba install -y -n base -c conda-forge -c bioconda -c defaults wget unzip bc libgomp ARG MAMBA_DOCKERFILE_ACTIVATE=1 #RUN cd /home/mambauser/ && wget https://github.com/bhattlab/phanta/archive/refs/tags/v${VERSION}.zip && unzip v${VERSION}.zip && mv /home/mambauser/phanta-${VERSION}/ /home/mambauser/phanta/ RUN cd /home/mambauser/ && wget https://github.com/edzuf/CrisprOpenDB/archive/ac7408aea8fc3f70e638af498a149f92b86e9d7e.zip && unzip ac7408aea8fc3f70e638af498a149f92b86e9d7e.zip && mv /home/mambauser/CrisprOpenDB-ac7408aea8fc3f70e638af498a149f92b86e9d7e/ /home/mambauser/CrisprOpenDB/ WORKDIR /home/mambauser/CrisprOpenDB/ RUN micromamba install -y -n base -c conda-forge -c bioconda -c defaults --file conda_env.txt && \ - micromamba install -c conda-forge -c bioconda -c defaults blast && \ + micromamba install -y -c conda-forge -c bioconda -c defaults blast && \ micromamba clean --all --yes RUN python setup.py install ARG MAMBA_DOCKERFILE_ACTIVATE=1