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Implement getters for data in the fast5 files #81

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kdoroschak opened this issue Feb 2, 2021 · 0 comments

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kdoroschak commented Feb 2, 2021 •

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Kinds of data to retrieve:

Raw signals
Metadata
- duration
- start time
- channel number
Classification results (assuming classification already happened)
Reads passing a specific filter (that was already run)

Use cases:

Retrieve all results/data from a single file, e.g. list of all reads passing the filter in one fast5
Get info for a certain read_id, given just the read_id and the directory of fast5 files (you shouldn't need to know exactly which file it's in)
Retrieve all results/data from the entire dataset across all fast5 files
- Keep ordering in mind, how do we guarantee (or should we guarantee) the same order every time you call this function?

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